CN186004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4) HSP 1 Score: 155.992 bits (393), Expect = 2.343e-37 Identity = 90/211 (42.65%), Postives = 119/211 (56.40%), Query Frame = 3 Query: 108 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD-------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 707 T LP+L Y Y ALEP E M++HH KHHQAYV N N +E+ + L K T + + A++ N GGHVNH++FWK L G +L AI FGS+EA + A GSGW WL L E +L V +TANQD P++ K V P+ +DVWEHAYYL Y+N +PDY+K WNV+NW AS ++++ Sbjct: 2 TYQLPELGYAYDALEPYFDKETMEIHHSKHHQAYVNNSNALLEKHPELLEKCPGALLKDLTQVPAEKRTAVRNNLGGHVNHTLFWKGLKT-----GTTLQGALKDAIIRDFGSVEAFQAEFEQAAATRFGSGWAWLVL--EEGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYYLHYQNRRPDYIKAFWNVVNWDEASRRFEEK 205
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.343e-37 Identity = 82/203 (40.39%), Postives = 115/203 (56.65%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704 LP LPY +ALEP I M +HH KHH YVT N A+E + +AL + ++ A++ NGGGH NH++FW+ L+P GG P L AI+ FGS + +K + A GSGW WL ++ +L + +T NQD + + T P+LG+DVWEHAYYL Y+N +PDY+ WNV+NW + Y + Sbjct: 5 LPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSP---NGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVNDG--KLEITSTPNQDTPLMEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVAKRYNE 200
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.060e-37 Identity = 88/207 (42.51%), Postives = 120/207 (57.97%), Query Frame = 3 Query: 114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK-----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689 +LP LPY Y ALEP + M++HH KHHQ YV N N +VE L + L+KV + + ++ N GGH NHS+FWK L G L AI+ FGS+++ +K A A GSGW WL L + K L V +TANQD PL+ +A + P++G+DVWEHAYYL+++N +PDY+K WNV+NW A+ Sbjct: 4 SLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLIKDLDKVPA----EKRTFMRNNAGGHANHSLFWKGLKL-----GTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKDDGK-LAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAA 200
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.060e-37 Identity = 86/202 (42.57%), Postives = 125/202 (61.88%), Query Frame = 3 Query: 126 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL-VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704 LPY +AL+PAI + M++H+ KHH+AYV N N ++ + L+K D ++QLQ A++ NGGGH NH+ FW++LA ++ G P +L I FGSL+A QK + + GSGW WL + T +L V +T NQD PL+ + T PLLG+DVWEHAYYL+Y+N + DY+K W+V+NW ++ Y + Sbjct: 30 LPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKT-YPELDKTD---LIQLQKQISKYNTAVRNNGGGHFNHTFFWESLAATNKTG--QPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWL-IVTPNGKLAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNE 224
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_PETMA (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Petromyzon marinus PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.996e-37 Identity = 84/148 (56.76%), Postives = 98/148 (66.22%), Query Frame = 3 Query: 159 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 599 IS IMQLHH KHH YV N N A ++L +A+ K D + + LQ AIKFNGGGH+NHSIFW NL+P GG P L AI+T FGS L +KMSA A+QGSGW WLG D E RL + ANQDPL +A T L+PLLGIDV Sbjct: 2 ISANIMQLHHSKHHATYVNNLNVAEQKLAEAVAKGDVTAEIALQPAIKFNGGGHINHSIFWTNLSP---NGGGAPTGDLQKAIETDFGSFTKLQEKMSAVSVAVQGSGWGWLGYDKETGRLRIAACANQDPL--QATTGLIPLLGIDV 144
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 5.219e-37 Identity = 84/204 (41.18%), Postives = 116/204 (56.86%), Query Frame = 3 Query: 102 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPH----SSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701 + TLP+LPYDYSAL P IS EI++LHH KHH AYV N +EQL +A +K ++ L+ + F+ GH+ HSI+W N+ +GGGEP L AI FGS +++ A QGSGW L + RL+VE + V + T P+L D WEHA+YLQYKN K D++ +W V+NW+ + Y+ Sbjct: 1 MSVYTLPELPYDYSALAPVISPEIIELHHDKHHAAYVKGANDTLEQLAEARDKETWGSINGLEKNLAFHLSGHILHSIYWHNM--TGDGGGEPLDKDGVGELADAIAESFGSFAGFRAQLTKAAATTQGSGWGVLAYEPLSGRLIVEQIYDHQGNVGQGST--PILVFDAWEHAFYLQYKNQKVDFIDAMWAVVNWQDVARRYE 200
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.816e-37 Identity = 82/187 (43.85%), Postives = 107/187 (57.22%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677 LP LPY+Y+ALEP I EIM+LHHQKHH YV N A+E++ + L V + FN GH+ H+IFW N+AP +GGG P + I+ FG E SA ++G GW L D + L + + L+T LVP+L IDVWEHAYYLQYKN + Y++N WNV+NW Sbjct: 9 LPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGG-TPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYYLQYKNDRGSYVENWWNVVNW 192
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 1.163e-36 Identity = 84/202 (41.58%), Postives = 118/202 (58.42%), Query Frame = 3 Query: 111 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT--STVVQLQGAIK----FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698 + LPDLPY Y ALEP I E M LHH KHH YV N N A+E+ + ++ + V Q+ I+ NGGGH+NH++FW+ L+P + + AI+ FGS + +A GSGW WL +D E K L V +TANQD +++ L P+L +DVWEHAYYL Y+NV+P+Y+K + V+NW + +Y Sbjct: 3 ILLPDLPYAYDALEPYIDAETMTLHHDKHHATYVANANAALEKHPEIGENLEVLLADVEQIPADIRQSLINNGGGHLNHALFWELLSPEK----TKVTAEVAAAINEAFGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYYLNYRNVRPNYIKAFFEVINWNTVARLY 197
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_BUCAI (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sodA PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36 Identity = 82/210 (39.05%), Postives = 121/210 (57.62%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704 LP LPY Y+ALEP E M++HH KHHQ Y+ N N +E+L LN++ +++ + A++ N GGH+NHS FWK+L G + L I+ FG+++ +K + GSGWVWL +V +T NQD PL+ K + P++G+D+WEHAYYL+Y+N + DY+K+ WNV+NW+ AS+ QK Sbjct: 5 LPSLPYSYNALEPFFDEETMKIHHTKHHQNYINNTNSILENTTFSSLPIEELISILNEI----ILEKKNALRNNAGGHINHSFFWKSLK-----SGTVLTNDLKIEIEKQFGTIDEFKEKFESVALNHFGSGWVWLVNQNGVLSIV--STVNQDSPLMGKLISNTYGYPIIGLDIWEHAYYLKYQNRRLDYIKSFWNVVNWEEASNRLQK 203
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.383e-36 Identity = 81/205 (39.51%), Postives = 115/205 (56.10%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701 LP+LPY Y ALEP I M+ HH KHH YVT N VE + L+KV + ++ +++ NGGGH NHS+FW+ L+P E G I +G+L+ + + + L GSGW WL ++ +L + TT NQD +T+ T P+L DVWEHAYYL+Y+N +PDY+ WN++NWK ++YQ Sbjct: 5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNNG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196 The following BLAST results are available for this feature:
BLAST of CN186004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 225
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186004 ID=CN186004; Name=CN186004; organism=Citrus sinensis; type=EST; length=818bpback to top |