CN186004

Overview
NameCN186004
Unique NameCN186004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 155.992 bits (393), Expect = 2.343e-37
Identity = 90/211 (42.65%), Postives = 119/211 (56.40%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD-------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 707
            T  LP+L Y Y ALEP    E M++HH KHHQAYV N N  +E+  + L K         T    + + A++ N GGHVNH++FWK L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ K    V   P+  +DVWEHAYYL Y+N +PDY+K  WNV+NW  AS  ++++
Sbjct:    2 TYQLPELGYAYDALEPYFDKETMEIHHSKHHQAYVNNSNALLEKHPELLEKCPGALLKDLTQVPAEKRTAVRNNLGGHVNHTLFWKGLKT-----GTTLQGALKDAIIRDFGSVEAFQAEFEQAAATRFGSGWAWLVL--EEGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYYLHYQNRRPDYIKAFWNVVNWDEASRRFEEK 205          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.343e-37
Identity = 82/203 (40.39%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP LPY  +ALEP I    M +HH KHH  YVT  N A+E       +  +AL     +    ++ A++ NGGGH NH++FW+ L+P    GG  P   L  AI+  FGS +   +K +   A   GSGW WL ++    +L + +T NQD  + +  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV+NW   +  Y +
Sbjct:    5 LPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSP---NGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVNDG--KLEITSTPNQDTPLMEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVAKRYNE 200          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.060e-37
Identity = 88/207 (42.51%), Postives = 120/207 (57.97%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK-----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            +LP LPY Y ALEP    + M++HH KHHQ YV N N            +VE L + L+KV      + +  ++ N GGH NHS+FWK L       G      L  AI+  FGS+++  +K  A  A   GSGW WL L  + K L V +TANQD PL+ +A +     P++G+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:    4 SLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLIKDLDKVPA----EKRTFMRNNAGGHANHSLFWKGLKL-----GTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKDDGK-LAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAA 200          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.060e-37
Identity = 86/202 (42.57%), Postives = 125/202 (61.88%), Query Frame = 3
Query:  126 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL-VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LPY  +AL+PAI  + M++H+ KHH+AYV N N  ++  +  L+K D   ++QLQ        A++ NGGGH NH+ FW++LA  ++ G   P  +L   I   FGSL+A  QK +   +   GSGW WL + T   +L V +T NQD PL+  + T   PLLG+DVWEHAYYL+Y+N + DY+K  W+V+NW   ++ Y +
Sbjct:   30 LPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKT-YPELDKTD---LIQLQKQISKYNTAVRNNGGGHFNHTFFWESLAATNKTG--QPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWL-IVTPNGKLAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNE 224          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_PETMA (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Petromyzon marinus PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.996e-37
Identity = 84/148 (56.76%), Postives = 98/148 (66.22%), Query Frame = 3
Query:  159 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 599
            IS  IMQLHH KHH  YV N N A ++L +A+ K D +  + LQ AIKFNGGGH+NHSIFW NL+P    GG  P   L  AI+T FGS   L +KMSA   A+QGSGW WLG D E  RL +   ANQDPL  +A T L+PLLGIDV
Sbjct:    2 ISANIMQLHHSKHHATYVNNLNVAEQKLAEAVAKGDVTAEIALQPAIKFNGGGHINHSIFWTNLSP---NGGGAPTGDLQKAIETDFGSFTKLQEKMSAVSVAVQGSGWGWLGYDKETGRLRIAACANQDPL--QATTGLIPLLGIDV 144          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 5.219e-37
Identity = 84/204 (41.18%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  102 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPH----SSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            +   TLP+LPYDYSAL P IS EI++LHH KHH AYV   N  +EQL +A +K    ++  L+  + F+  GH+ HSI+W N+    +GGGEP        L  AI   FGS      +++   A  QGSGW  L  +    RL+VE   +    V +  T  P+L  D WEHA+YLQYKN K D++  +W V+NW+  +  Y+
Sbjct:    1 MSVYTLPELPYDYSALAPVISPEIIELHHDKHHAAYVKGANDTLEQLAEARDKETWGSINGLEKNLAFHLSGHILHSIYWHNM--TGDGGGEPLDKDGVGELADAIAESFGSFAGFRAQLTKAAATTQGSGWGVLAYEPLSGRLIVEQIYDHQGNVGQGST--PILVFDAWEHAFYLQYKNQKVDFIDAMWAVVNWQDVARRYE 200          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.816e-37
Identity = 82/187 (43.85%), Postives = 107/187 (57.22%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            LP LPY+Y+ALEP I  EIM+LHHQKHH  YV   N A+E++ + L       V  +     FN  GH+ H+IFW N+AP  +GGG  P   +   I+  FG  E      SA    ++G GW  L  D   + L +      + L+T    LVP+L IDVWEHAYYLQYKN +  Y++N WNV+NW
Sbjct:    9 LPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGG-TPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYYLQYKNDRGSYVENWWNVVNW 192          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.163e-36
Identity = 84/202 (41.58%), Postives = 118/202 (58.42%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT--STVVQLQGAIK----FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E+  +    ++   + V Q+   I+     NGGGH+NH++FW+ L+P          + +  AI+  FGS +      +A      GSGW WL +D E K L V +TANQD  +++   L P+L +DVWEHAYYL Y+NV+P+Y+K  + V+NW   + +Y
Sbjct:    3 ILLPDLPYAYDALEPYIDAETMTLHHDKHHATYVANANAALEKHPEIGENLEVLLADVEQIPADIRQSLINNGGGHLNHALFWELLSPEK----TKVTAEVAAAINEAFGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYYLNYRNVRPNYIKAFFEVINWNTVARLY 197          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_BUCAI (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sodA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 82/210 (39.05%), Postives = 121/210 (57.62%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP LPY Y+ALEP    E M++HH KHHQ Y+ N N            +E+L   LN++    +++ + A++ N GGH+NHS FWK+L       G    + L   I+  FG+++   +K  +      GSGWVWL        +V  +T NQD PL+ K  +     P++G+D+WEHAYYL+Y+N + DY+K+ WNV+NW+ AS+  QK
Sbjct:    5 LPSLPYSYNALEPFFDEETMKIHHTKHHQNYINNTNSILENTTFSSLPIEELISILNEI----ILEKKNALRNNAGGHINHSFFWKSLK-----SGTVLTNDLKIEIEKQFGTIDEFKEKFESVALNHFGSGWVWLVNQNGVLSIV--STVNQDSPLMGKLISNTYGYPIIGLDIWEHAYYLKYQNRRLDYIKSFWNVVNWEEASNRLQK 203          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.383e-36
Identity = 81/205 (39.51%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYYL+Y+N +PDY+   WN++NWK   ++YQ
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNNG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196          
The following BLAST results are available for this feature:
BLAST of CN186004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_HAEDU2.343e-3742.65Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]
SODM_BACHD2.343e-3740.39Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_YEREN3.060e-3742.51Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]
SODM_ACIAD3.060e-3742.57Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODM_PETMA3.996e-3756.76Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_STRCO5.219e-3741.18Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coe... [more]
SODF_AERPE6.816e-3743.85Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODM_STRMU1.163e-3641.58Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODM_BUCAI1.983e-3639.05Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM2_STAAB3.383e-3639.51Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186004 ID=CN186004; Name=CN186004; organism=Citrus sinensis; type=EST; length=818bp
CGATCAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTCCGCTTGCC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGGTTCAAGAGACGAATATCCTTGCAGCTT
TTCACGCTGAAGTGACAA
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