CN186004

Overview
NameCN186004
Unique NameCN186004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 8.070e-30
Identity = 72/192 (37.50%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI   FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGT--AFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_PALVU (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Palinurus vulgaris PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.054e-29
Identity = 71/147 (48.30%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  159 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 599
            IS  IMQ+HH KHHQAY+ N     E+L QA    D + +  L  AIKFNGGGH+NH+IFW N+AP    GGEP    +  AI   FGS +A   K S     ++GSGW WLG   +  +L V T  NQDPL      L+PLLG+DV
Sbjct:    2 ISEMIMQIHHTKHHQAYINNLKACTEKLKQAEQANDVAAMNALLPAIKFNGGGHINHTIFWTNMAP--SAGGEPA-GPVADAITKEFGSFQAFKDKFSTASVGVKGSGWGWLGYCPKNDKLAVATCQNQDPL-QLTHGLIPLLGLDV 144          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.054e-29
Identity = 70/204 (34.31%), Postives = 109/204 (53.43%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP+L YDY A+EP I  + M++HH KHH  +V N N  +E++ + ++  D S ++        + Q  I+ N GG+ NH+++++ L P   G  +         I+  FGSL+ L   +      + GSGW WL L  E    V+       PL+    +  P+LGIDVWEHAYYL+Y+N + +Y+      +NW+  S VY +
Sbjct:    4 LPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGK-IHLTDVSNILKNIHDFPEEFQTLIRNNAGGYSNHTLYFRTLRP---GNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQDSPLMN---SYKPILGIDVWEHAYYLKYQNRRIEYVDAFLKALNWEEVSKVYNE 200          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 2.348e-29
Identity = 71/191 (37.17%), Postives = 100/191 (52.36%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY+ +ALEP IS E ++ HH KHH  YV N N  +    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T    +PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + +
Sbjct:    5 LPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGT-EFEGKSLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGNPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWDFVA 188          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 4.005e-29
Identity = 71/195 (36.41%), Postives = 101/195 (51.79%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            LP LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + ++ ++
Sbjct:    5 LPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFE 192          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.005e-29
Identity = 72/199 (36.18%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            T  +P LPY  +ALEP IS + +  H+ KH Q YV N N  V         V+        GAI  N G  +NH++++   AP  +     P   LG AI   FGS E   ++ +A    L GSGW WL +D + K  + +     +P+      L PLLG DVWEHAYYL Y+N + D++  +W +++W    DV +K
Sbjct:    2 TYEMPKLPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEYEGKTVEAIVASAPDGAIFNNAGQVLNHTLYFLQFAP--KPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWLSVDKDGKLHITKEPNGSNPV---RAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWEIIDW----DVVEK 191          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.231e-29
Identity = 76/198 (38.38%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 692
            LPDLPYD  + +P  + E    HH KHH AYV N N  ++   + L K D   ++    Q   A  FN    + NHS FW ++ P  +GGG+P    L   I+  FGS E   ++   E     GSGW WL       RL +  TAN    +  A  + PLL  DVWEHAYY+ Y+N +PDY+   I +++NWK+  D
Sbjct:   16 LPDLPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDK-EELQKKDLEEIIEWSSQNSNAAIFNNAAQIWNHSFFWHSIKP--QGGGKPSGKILE-QINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYHD--NRLQIIKTANAGTPI--ANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVED 205          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 8.923e-29
Identity = 71/195 (36.41%), Postives = 100/195 (51.28%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            LP LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  LAP    GG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + ++ ++
Sbjct:    5 LPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKTSSGGIFNNAAQVWNHTFYWNCLAP--NAGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFE 192          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.596e-28
Identity = 70/198 (35.35%), Postives = 105/198 (53.03%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.596e-28
Identity = 70/198 (35.35%), Postives = 105/198 (53.03%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
The following BLAST results are available for this feature:
BLAST of CN186004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_ECO578.070e-3037.50Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODM_PALVU1.054e-2948.30Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_BORBU1.054e-2934.31Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODF_PSEAE2.348e-2937.17Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_PSEPK4.005e-2936.41Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_BACFR4.005e-2936.18Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODF_RICFE5.231e-2938.38Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_PSEPU8.923e-2936.41Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_PLAVI2.596e-2835.35Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAFX2.596e-2835.35Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186004 ID=CN186004; Name=CN186004; organism=Citrus sinensis; type=EST; length=818bp
CGATCAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTCCGCTTGCC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGGTTCAAGAGACGAATATCCTTGCAGCTT
TTCACGCTGAAGTGACAA
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