CN186004

Overview
NameCN186004
Unique NameCN186004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_MYCLP (Superoxide dismutase [Mn] OS=Mycobacterium lepraemurium GN=sodA PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 7.519e-44
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            TLPDL +DY ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHS++WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:    5 TLPDLDWDYEALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSLWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 172.555 bits (436), Expect = 2.419e-42
Identity = 90/203 (44.33%), Postives = 120/203 (59.11%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP+LPY Y ALEP I  E M +HH KHH  YVTN NKAVE      NK     V  L         A++ NGGGH NH +FW  L+P   GGGEP   +L   I++ FGS +   ++ +A  A   GSGW WL ++    +L + +T NQD  +++  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV+NW   + +Y +
Sbjct:    5 LPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSP--NGGGEPT-GALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNG--KLEITSTPNQDSPLSEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSE 200          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.419e-42
Identity = 92/205 (44.88%), Postives = 125/205 (60.98%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK-----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            L  LPYDY+ALEP I  + M+LHH KHH  YV N N+           +V+ L Q LN+V  +    ++  I+ NGGGHVNH++FW+ +AP  + GG P   ++  AID  FGS +A  Q+ +  GA   GSGW WL  D + K L + +TANQD  +   P   P+LG DVWEHAYYL+Y+N + +YL N WNV+NW+  +  Y
Sbjct:   46 LDPLPYDYAALEPYIDAQTMRLHHDKHHATYVNNINETLKAYPDLQKQSVDSLIQNLNQVPEA----IRTKIRNNGGGHVNHTMFWQIMAP--KAGGTPT-GAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLVSDRQGK-LSITSTANQDNPLMSNPNAYPILGNDVWEHAYYLKYQNRRAEYLTNWWNVVNWQAVNQRY 242          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.159e-42
Identity = 93/204 (45.59%), Postives = 124/204 (60.78%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQA-------LNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            TLP L Y Y+ALEP I  + M++HH KHHQ Y+ N N A+E    A       L K+D S    L+G ++ NGGGH NHS+FWK L P   GGGEP   +L  AI +  G L+   +  +       GSGW WL +  E K+LVVE+T NQD  ++   T  P+LG+DVWEHAYYL+Y+N +P+Y+   +NV+NW   S  YQ+
Sbjct:    3 TLPPLDYAYTALEPHIDAQTMEIHHTKHHQTYINNVNAALEGTSFANEPVEALLQKLD-SLPENLRGPVRNNGGGHANHSLFWKVLTP--NGGGEPK-GALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWLSVTPE-KKLVVESTGNQDSPLSTGNT--PILGLDVWEHAYYLKYQNRRPEYIGAFFNVVNWDEVSRRYQE 199          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.126e-42
Identity = 90/189 (47.62%), Postives = 116/189 (61.38%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.126e-42
Identity = 90/189 (47.62%), Postives = 116/189 (61.38%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.191e-42
Identity = 90/207 (43.48%), Postives = 123/207 (59.42%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP+LPY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:    6 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 201          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.200e-41
Identity = 89/194 (45.88%), Postives = 118/194 (60.82%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            TLP LPY Y ALEP I  + M++HH KHHQ Y+ N N A+E    A   V+       S    LQG ++ NGGGH NHS+FW  ++P   GGGE P   +  AID   G  E   +  +    +  GSGW WL + T  K++VVE+TANQD  + +  T  P+LG+DVWEHAYYL+Y+N +PDY+   +NV+NW
Sbjct:    4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYYLKYQNRRPDYIGAFYNVVNW 191          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.200e-41
Identity = 89/194 (45.88%), Postives = 118/194 (60.82%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            TLP LPY Y ALEP I  + M++HH KHHQ Y+ N N A+E    A   V+       S    LQG ++ NGGGH NHS+FW  ++P   GGGE P   +  AID   G  E   +  +    +  GSGW WL + T  K++VVE+TANQD  + +  T  P+LG+DVWEHAYYL+Y+N +PDY+   +NV+NW
Sbjct:    4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYYLKYQNRRPDYIGAFYNVVNW 191          
BLAST of CN186004 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.048e-41
Identity = 88/208 (42.31%), Postives = 121/208 (58.17%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            T TLP+LPY Y ALEP I  E M LHH KHH  YVTN N           K+VE L   +N +       ++ A++ NGGGH NH+ FW+ +AP    GG+P   ++  AID  FGS + +            GSGW WL ++    +L + +T NQD  +    T  P+LG+DVWEHAYYL+YKNV+PDY++  WNV+NW   ++++
Sbjct:    2 TYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVENLISDMNAIPED----IRTAVRNNGGGHANHTFFWEIMAP--NAGGQPT-GAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLVVNNG--KLEITSTPNQDSPLMDGQT--PVLGLDVWEHAYYLKYKNVRPDYIEAFWNVVNWDKVNELF 198          
The following BLAST results are available for this feature:
BLAST of CN186004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_MYCLP7.519e-4447.87Superoxide dismutase [Mn] OS=Mycobacterium lepraem... [more]
SODM_BACSU2.419e-4244.33Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM1_PLEBO2.419e-4244.88Superoxide dismutase [Mn] 1 OS=Plectonema boryanum... [more]
SODF_METJ3.159e-4245.59Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]
SODF_MYCTU4.126e-4247.62Superoxide dismutase [Fe] OS=Mycobacterium tubercu... [more]
SODF_MYCBO4.126e-4247.62Superoxide dismutase [Fe] OS=Mycobacterium bovis G... [more]
SODM1_BACAN9.191e-4243.48Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_XANCP1.200e-4145.88Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC81.200e-4145.88Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_ENTFA2.048e-4142.31Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002D12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186004 ID=CN186004; Name=CN186004; organism=Citrus sinensis; type=EST; length=818bp
CGATCAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTCCGCTTGCC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGGTTCAAGAGACGAATATCCTTGCAGCTT
TTCACGCTGAAGTGACAA
back to top