DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_DEBHA (Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 3.659e-52
Identity = 104/132 (78.79%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_TRIRE (Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_PHANO (Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_NEUCR (Histone H3 OS=Neurospora crassa GN=hh3 PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_MARPO (Histone H3 OS=Marchantia polymorpha PE=3 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_MAGGR (Histone H3 OS=Magnaporthe grisea GN=HHT1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_GIBZE (Histone H3 OS=Gibberella zeae GN=HHT1 PE=3 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_CHAGB (Histone H3 OS=Chaetomium globosum GN=HHT1 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 104/131 (79.39%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 4.779e-52
Identity = 105/132 (79.55%), Postives = 110/132 (83.33%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKSAPA GGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI PKDI LARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGERS 136
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 6.241e-52
Identity = 106/132 (80.30%), Postives = 110/132 (83.33%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRK LATKAARKSA  TG VKK HRFRPGTVALREIR+YQKSTELL+RKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    5 KQTARKSTGGKAPRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H31_DEBHA3.659e-5278.79Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1... [more]
H3_TRIRE4.779e-5279.39Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2[more]
H3_PHANO4.779e-5279.39Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 S... [more]
H3_NEUCR4.779e-5279.39Histone H3 OS=Neurospora crassa GN=hh3 PE=1 SV=3[more]
H3_MARPO4.779e-5279.39Histone H3 OS=Marchantia polymorpha PE=3 SV=3[more]
H3_MAGGR4.779e-5279.39Histone H3 OS=Magnaporthe grisea GN=HHT1 PE=3 SV=1[more]
H3_GIBZE4.779e-5279.39Histone H3 OS=Gibberella zeae GN=HHT1 PE=3 SV=3[more]
H3_CHAGB4.779e-5279.39Histone H3 OS=Chaetomium globosum GN=HHT1 PE=2 SV=... [more]
H31_USTMA4.779e-5279.55Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]
H33L2_CAEEL6.241e-5280.30Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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