DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_PICGU (Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.390e-51
Identity = 103/132 (78.03%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPVTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.390e-51
Identity = 106/133 (79.70%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPA-TGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKS P   GG+K+P R+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRF                 G+FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_COCIM (Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.816e-51
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQ+A KAARK+AP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQIAAKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 1.816e-51
Identity = 107/132 (81.06%), Postives = 110/132 (83.33%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARKS P+T GVK PHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDF TDLRF                 GL EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_CANAL (Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 1.816e-51
Identity = 102/132 (77.27%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRF                 GLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_AJECA (Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 3.098e-51
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHR++PG VALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGAVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_PICST (Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.046e-51
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_DEBHA (Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 4.046e-51
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 4.046e-51
Identity = 102/131 (77.86%), Postives = 110/131 (83.97%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHRFRPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRF                 GLFEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 4.046e-51
Identity = 102/131 (77.86%), Postives = 110/131 (83.97%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHRFRPGTVALREIRKYQKST+LLIRKLPFQRLVR+IA +FK +LRF                 GLFEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_PICGU1.390e-5178.03Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3... [more]
H33B_LILLO1.390e-5179.70Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3_COCIM1.816e-5177.27Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV... [more]
H3L_HUMAN1.816e-5181.06Histone H3-like OS=Homo sapiens PE=1 SV=3[more]
H33_CANAL1.816e-5177.27Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3[more]
H3_AJECA3.098e-5177.27Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 S... [more]
H33_PICST4.046e-5177.27Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1[more]
H33_DEBHA4.046e-5177.27Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3... [more]
H31_TETTH4.046e-5177.86Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY4.046e-5177.86Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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