DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_ZYGBA (Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.177e-50
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_YEAST (Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.177e-50
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_KLULA (Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.177e-50
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_CRYNE (Histone H3 OS=Cryptococcus neoformans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.177e-50
Identity = 104/134 (77.61%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPA--TGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLATKAARK AP+  +GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI PKD+QLARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLATKAARKQAPSQVSGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLQLARRLRGERS 138          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_CANGA (Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.177e-50
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_ASHGO (Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.177e-50
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:    5 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 1.301e-49
Identity = 104/133 (78.20%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTGGK PRK+LATKAARK+  P  GGVK+ HRFRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQDFK DLRF                 GLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    5 KQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRGERA 137          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.700e-49
Identity = 103/132 (78.03%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTA KSTG KAPRKQLATKAA KSAPA GGVKKPH +RPGTVAL EI +YQKSTELLI KLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRV+IMPKDIQL RRIRGERA
Sbjct:    5 KQTACKSTGRKAPRKQLATKAAHKSAPAMGGVKKPHCYRPGTVALHEIHRYQKSTELLICKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_TETPY (Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.899e-49
Identity = 99/131 (75.57%), Postives = 108/131 (82.44%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTG KAPRKQLATKAARKSAP +GGVKKPH+FRPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K D+RF                 GLFEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:    5 KQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKNDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 6.459e-49
Identity = 98/131 (74.81%), Postives = 108/131 (82.44%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKSTG KAPRKQLATKAARKSAP +GGVKKPH+FRPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RF                 GLFEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:    5 KQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_ZYGBA1.177e-5077.27Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=... [more]
H3_YEAST1.177e-5077.27Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=... [more]
H3_KLULA1.177e-5077.27Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV... [more]
H3_CRYNE1.177e-5077.61Histone H3 OS=Cryptococcus neoformans GN=HHT1 PE=3... [more]
H3_CANGA1.177e-5077.27Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2[more]
H3_ASHGO1.177e-5077.27Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3[more]
H3L2_ARATH1.301e-4978.20Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 ... [more]
H3L_CAIMO1.700e-4978.03Histone H3-like OS=Cairina moschata PE=3 SV=2[more]
H33_TETPY2.899e-4975.57Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H33_TETTH6.459e-4974.81Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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