DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 7.141e-48
Identity = 96/132 (72.73%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARK+ GGKAPRK +  K+ARK+A  T G+KKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQ+FK DLRF                  LFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    5 KQTARKNVGGKAPRKHIGQKSARKTASTTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33B_DICDI (Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.078e-47
Identity = 97/132 (73.48%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTG K PRK L  K+++KS P+T G+KK HRFRPGTVALREIR+YQKS+ELLI+KLPFQRLVREIAQ+FKTDLRF                 GLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    5 KQTARKSTGAKVPRKHLGNKSSQKSFPSTQGLKKTHRFRPGTVALREIRRYQKSSELLIKKLPFQRLVREIAQEFKTDLRFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.714e-47
Identity = 95/131 (72.52%), Postives = 106/131 (80.92%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            KQTARKST  KAPRKQLA KAARKSAP +GG+KKPH+FRPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RF                 GLFEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:    5 KQTARKSTSIKAPRKQLAAKAARKSAPISGGIKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.629e-47
Identity = 98/135 (72.59%), Postives = 105/135 (77.78%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAP---ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTG K PRK + +K A K  P   ++GGVKK HRFRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQ+FKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDI LARRIRGER+
Sbjct:    5 KQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRGERS 139          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33L3_CAEEL (Putative histone H3.3-like type 3 OS=Caenorhabditis elegans GN=his-69 PE=5 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.297e-46
Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 1
Query:   25 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            GGKAPRKQLATKAARK+A   G VKKPHRFRPGTVALREIR+YQKST+LL+RKLPFQRLVREIAQD K DLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER
Sbjct:    4 GGKAPRKQLATKAARKNAIVVGAVKKPHRFRPGTVALREIRRYQKSTDLLLRKLPFQRLVREIAQDVKQDLRFQSAAIQALQEASEYFLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGER 126          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_YARLI (Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 95/130 (73.08%), Postives = 102/130 (78.46%), Query Frame = 1
Query:   10 ARKSTGGKAPRKQLATKAARKSAP---ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            ARK TGGKAPRKQ+ +KAARKSA     +GGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTI  KDI LARR+RGE
Sbjct:   10 ARKVTGGKAPRKQIGSKAARKSAAPSNTSGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIHLARRLRGE 139          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L_MOUSE (Putative histone H3-like OS=Mus musculus PE=5 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 9.651e-45
Identity = 97/132 (73.48%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKST GKAPRKQLATKAA KSAP+TGGVKK HR+RP TVAL EIR+Y  STELLI KLPFQRLV+EIAQDFKTDLRF                 GLFEDTNLCAIHAK VT++PKDIQLA  I GERA
Sbjct:    5 KQTARKSTCGKAPRKQLATKAAXKSAPSTGGVKKSHRYRPDTVALLEIRRYH-STELLIHKLPFQRLVQEIAQDFKTDLRFQSAAIGALQEASEANRVGLFEDTNLCAIHAKCVTVIPKDIQLAHSILGERA 135          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33C_DICDI (Histone H3.3 type c OS=Dictyostelium discoideum GN=H3c PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44
Identity = 93/132 (70.45%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KQTARKSTG K PRK L++K++  S P    +KK HRFRPGTVALREIR+YQKS++LLI+KLPFQRLVREIAQ+FKTDLRF                 GLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    5 KQTARKSTGAKVPRKHLSSKSSFPSKPVNEVLKKTHRFRPGTVALREIRRYQKSSDLLIKKLPFQRLVREIAQEFKTDLRFQAAAIEALQEATEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.884e-40
Identity = 85/111 (76.58%), Postives = 88/111 (79.28%), Query Frame = 1
Query:   22 TGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            TG KAPRK LA KAARK+APA GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA D+K+DLRF                 GLFEDTNLCAIHA RVTIMP
Sbjct:    2 TGAKAPRKALANKAARKTAPADGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTIMP 112          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.034e-38
Identity = 83/114 (72.81%), Postives = 91/114 (79.82%), Query Frame = 1
Query:   19 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_EUPCR7.141e-4872.73Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H33B_DICDI2.078e-4773.48Histone H3.3 type b OS=Dictyostelium discoideum GN... [more]
H34_TETTH2.714e-4772.52Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE... [more]
H33A_DICDI4.629e-4772.59Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]
H33L3_CAEEL2.297e-4677.24Putative histone H3.3-like type 3 OS=Caenorhabditi... [more]
H3_YARLI4.332e-4573.08Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=... [more]
H3L_MOUSE9.651e-4573.48Putative histone H3-like OS=Mus musculus PE=5 SV=2[more]
H33C_DICDI1.646e-4470.45Histone H3.3 type c OS=Dictyostelium discoideum GN... [more]
H34_STYLE1.884e-4076.58Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H36_STYLE1.034e-3872.81Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
back to top