DC900123
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3) HSP 1 Score: 189.889 bits (481), Expect = 7.141e-48 Identity = 96/132 (72.73%), Postives = 106/132 (80.30%), Query Frame = 1 Query: 1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396 KQTARK+ GGKAPRK + K+ARK+A T G+KKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQ+FK DLRF LFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+ Sbjct: 5 KQTARKNVGGKAPRKHIGQKSARKTASTTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33B_DICDI (Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.078e-47 Identity = 97/132 (73.48%), Postives = 106/132 (80.30%), Query Frame = 1 Query: 1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396 KQTARKSTG K PRK L K+++KS P+T G+KK HRFRPGTVALREIR+YQKS+ELLI+KLPFQRLVREIAQ+FKTDLRF GLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA Sbjct: 5 KQTARKSTGAKVPRKHLGNKSSQKSFPSTQGLKKTHRFRPGTVALREIRRYQKSSELLIKKLPFQRLVREIAQEFKTDLRFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.714e-47 Identity = 95/131 (72.52%), Postives = 106/131 (80.92%), Query Frame = 1 Query: 1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393 KQTARKST KAPRKQLA KAARKSAP +GG+KKPH+FRPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RF GLFEDTNLCAIHA+RVTIM KD+ LARRIRGER Sbjct: 5 KQTARKSTSIKAPRKQLAAKAARKSAPISGGIKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 4.629e-47 Identity = 98/135 (72.59%), Postives = 105/135 (77.78%), Query Frame = 1 Query: 1 KQTARKSTGGKAPRKQLATKAARKSAP---ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396 KQTARKSTG K PRK + +K A K P ++GGVKK HRFRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQ+FKTDLRF GLFEDTNLCAIHAKRVTIMPKDI LARRIRGER+ Sbjct: 5 KQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRGERS 139
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33L3_CAEEL (Putative histone H3.3-like type 3 OS=Caenorhabditis elegans GN=his-69 PE=5 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.297e-46 Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 1 Query: 25 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393 GGKAPRKQLATKAARK+A G VKKPHRFRPGTVALREIR+YQKST+LL+RKLPFQRLVREIAQD K DLRF GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER Sbjct: 4 GGKAPRKQLATKAARKNAIVVGAVKKPHRFRPGTVALREIRRYQKSTDLLLRKLPFQRLVREIAQDVKQDLRFQSAAIQALQEASEYFLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGER 126
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_YARLI (Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45 Identity = 95/130 (73.08%), Postives = 102/130 (78.46%), Query Frame = 1 Query: 10 ARKSTGGKAPRKQLATKAARKSAP---ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390 ARK TGGKAPRKQ+ +KAARKSA +GGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF LFEDTNLCAIHAKRVTI KDI LARR+RGE Sbjct: 10 ARKVTGGKAPRKQIGSKAARKSAAPSNTSGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIHLARRLRGE 139
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L_MOUSE (Putative histone H3-like OS=Mus musculus PE=5 SV=2) HSP 1 Score: 179.489 bits (454), Expect = 9.651e-45 Identity = 97/132 (73.48%), Postives = 103/132 (78.03%), Query Frame = 1 Query: 1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396 KQTARKST GKAPRKQLATKAA KSAP+TGGVKK HR+RP TVAL EIR+Y STELLI KLPFQRLV+EIAQDFKTDLRF GLFEDTNLCAIHAK VT++PKDIQLA I GERA Sbjct: 5 KQTARKSTCGKAPRKQLATKAAXKSAPSTGGVKKSHRYRPDTVALLEIRRYH-STELLIHKLPFQRLVQEIAQDFKTDLRFQSAAIGALQEASEANRVGLFEDTNLCAIHAKCVTVIPKDIQLAHSILGERA 135
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33C_DICDI (Histone H3.3 type c OS=Dictyostelium discoideum GN=H3c PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44 Identity = 93/132 (70.45%), Postives = 103/132 (78.03%), Query Frame = 1 Query: 1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396 KQTARKSTG K PRK L++K++ S P +KK HRFRPGTVALREIR+YQKS++LLI+KLPFQRLVREIAQ+FKTDLRF GLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA Sbjct: 5 KQTARKSTGAKVPRKHLSSKSSFPSKPVNEVLKKTHRFRPGTVALREIRRYQKSSDLLIKKLPFQRLVREIAQEFKTDLRFQAAAIEALQEATEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.884e-40 Identity = 85/111 (76.58%), Postives = 88/111 (79.28%), Query Frame = 1 Query: 22 TGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354 TG KAPRK LA KAARK+APA GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA D+K+DLRF GLFEDTNLCAIHA RVTIMP Sbjct: 2 TGAKAPRKALANKAARKTAPADGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTIMP 112
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.034e-38 Identity = 83/114 (72.81%), Postives = 91/114 (79.82%), Query Frame = 1 Query: 19 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354 +TGGKAPRK +A K A+KS A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRF GLFEDTNLCAIHAKRVTIMP Sbjct: 1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114 The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 211
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bpback to top |