DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1492 contig Csv1_Contig1492:90..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.350e-38
Identity = 83/114 (72.81%), Postives = 91/114 (79.82%), Query Frame = 1
Query:   19 STGGKAPRKQLATKAARKSAPA--TGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            +TG KAPR+QLA KAARK+A    +GGVKKPHRFRPGTVALREIRK+QKSTELLIRKLPFQRLVREIAQ++K+DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGAKAPREQLANKAARKTAQVAQSGGVKKPHRFRPGTVALREIRKFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.303e-38
Identity = 83/114 (72.81%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   19 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.928e-38
Identity = 83/114 (72.81%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   19 STGGKAPRKQLATKAARKSAP--ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            +TG KAPRKQLA KAARKS    A  GVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGAKAPRKQLANKAARKSTNVNAVSGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.143e-37
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   19 STGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            +TG KAPRK LA KAARK+A PA  G+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIA ++K DLRF                 GLFEDTNLCAIH KRVTIMP
Sbjct:    1 NTGAKAPRKHLANKAARKTAAPANAGIKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTIMP 113          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H39_STYLE (Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H3-2 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.546e-37
Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   19 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRF                 GLFEDTNL AIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H37_STYLE (Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H3-7 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.546e-37
Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   19 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 354
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRF                 GLFEDTNL AIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_GUITH (Histone H3 OS=Guillardia theta PE=3 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.342e-37
Identity = 82/130 (63.08%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            KQTARK+ GG     +++ K A+        +KK HR++PGTVALREIRKYQKST LLIRKLPFQRLVRE+AQD+K+DLRF                  LFEDTNLCAIHAKRVTIMPKDI LARRIRGE
Sbjct:    5 KQTARKTVGGDI-NSRISEKRAKSDNSKNIDLKKVHRYKPGTVALREIRKYQKSTNLLIRKLPFQRLVRELAQDYKSDLRFQNSAVLALQEASESYLVNLFEDTNLCAIHAKRVTIMPKDIYLARRIRGE 133          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L4_ARATH (Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g12910 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 9.674e-37
Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    4 QTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            QTARK+TGGKAP    A +  + S P    +KKP+R++PGTVALREIRKYQK+T+L+IRKLPFQRLV+EIAQ  K DLRF                 G+FEDTNLCA+HAKR TIMPKDIQLA+R+RG+R
Sbjct:    6 QTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQLAKRLRGDR 130          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.650e-36
Identity = 81/123 (65.85%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 369
            K TARKS GGKAPRK LATKAARK  P  G VKK  R+RP + AL+EIRKYQKSTELL+RKLPFQRLVRE+AQ+   ++RF                 GLFEDTNLCAIHAKRVTIMPKD+Q+
Sbjct:    5 KHTARKSFGGKAPRKSLATKAARKVFPVDGQVKK--RYRPSSNALKEIRKYQKSTELLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQV 125          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H31_ENCCU (Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*ELSD 411
            KQ+ARK+TGGKAPRKQL+ K+ARK  +PA+    K  R+RPG+VAL+EIR+YQKST+ LIR+LPFQR  R + ++    TD+RF                 GLFED  LCA HAKRVT+ PKDI L  ++R      +SD
Sbjct:    5 KQSARKTTGGKAPRKQLSAKSARKGVSPASSAGAKKSRYRPGSVALKEIRRYQKSTDFLIRRLPFQRACRSVVKECSNATDIRFQGPALASIQEALEVYLVGLFEDAMLCAYHAKRVTVFPKDISLVLKLRSRHVKSISD 144          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H31_STYLE1.350e-3872.81Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33_STYLE2.303e-3872.81Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H35_STYLE3.928e-3872.81Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H38_STYLE1.143e-3770.80Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H39_STYLE2.546e-3771.93Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H37_STYLE2.546e-3771.93Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H3_GUITH4.342e-3763.08Histone H3 OS=Guillardia theta PE=3 SV=3[more]
H3L4_ARATH9.674e-3761.54Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g1... [more]
H33L1_CAEEL1.650e-3665.85Histone H3.3-like type 1 OS=Caenorhabditis elegans... [more]
H31_ENCCU7.174e-3251.43Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 P... [more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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