DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 243
            K+TA KSTGGK PRKQL  +AA KSAP+T G+ KPHR+RPGTVALREIR YQKST  LIRKLPFQRLVREIAQDFKTDL+F
Sbjct:    5 KRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKF 85          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L3_LILLO (Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.266e-28
Identity = 76/152 (50.00%), Postives = 86/152 (56.58%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPAT-----------------------GGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            K  AR STGGKAPRKQLA KA RK+AP T                        GVK+PHR+RPG + LREIRKY+K+    I KLPF RLVR+I Q+ K  LRF                  LFED    AIHAKRVT++PKDIQLAR I G
Sbjct:    5 KLNARMSTGGKAPRKQLAYKAVRKAAPPTIGVKLPNSYRPGDQTVCKPAPPTDGVKEPHRYRPGKMGLREIRKYKKNARFFISKLPFHRLVRKITQNLKAHLRFQSTAMPAPEEVSEAYLVKLFED----AIHAKRVTLVPKDIQLARCIGG 152          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 70/117 (59.83%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   43 KQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            K +A KAA+K        KK  R  PG VAL EI+  Q+STELL+RK PFQ LVREIAQ  K+DLRF                 GLFEDTNLCAIHAKR+TIMPKD+QLARRIRGER
Sbjct:   20 KNVAFKAAKKMLSKDSTKKK--RAHPGAVALTEIKVLQRSTELLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQLARRIRGER 134          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.185e-26
Identity = 63/80 (78.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  157 KSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
            KSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 80          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 69/122 (56.56%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   37 PRKQLATKA-ARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            PR+   T+    ++ P    VKK  R+RPGT ALREIR+YQKST+LLIRKLPF RLVREI+ DF      LR+                  L EDTNLCAIHAKRVTIM KDIQLARRIRG+
Sbjct:   91 PRRTTTTRPEVNRTVPR---VKK--RYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRIRGQ 207          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_DANRE (Histone H3-like centromeric protein A OS=Danio rerio GN=cenpa PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 59/112 (52.68%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   55 TKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            ++  R S P+    +K H+FRPGT AL EIRKYQKST LL+RK PF RLVRE+ Q F  + + +                  LF D NLCAIHAKRVT+ P+DIQLARRIRG
Sbjct:   30 SRTRRHSGPSGSSPRKKHKFRPGTRALMEIRKYQKSTGLLLRKAPFSRLVREVCQMFSREHMMWQGYALMALQEAAEAFMVRLFSDANLCAIHAKRVTLFPRDIQLARRIRG 141          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 61/119 (51.26%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   40 RKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK---TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            R++    + +   P   G K+  R+RPGT+AL+EIR YQ++T+LL+ KLPF RLVREIA  F+    ++R+                  LFEDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   31 RRKSRASSVQPGDPVPQGKKR--RYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   64 ARKSAPATGGVKKPH----RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD----FKTD--LRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            A+KS  A  G   P     R+RPGT ALREIRKYQ+ST+LLI++LPF R+VREI+ +    F TD  LR+                  LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct:    2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.092e-23
Identity = 64/132 (48.48%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR-FRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            K+TAR        ++ + +K ++K+     GVK+ HR +RPGT A+REIRK+QKST LLI+  PFQRLVR + +  K  LRF                  L  DTNL  IHAKRVTI PKDIQLA R+RGER
Sbjct:    5 KETARA-------KRTITSKKSKKAPSGASGVKRSHRRWRPGTCAIREIRKFQKSTSLLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQLALRLRGER 128          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L_ENCCU (Histone H3-like protein OS=Encephalitozoon cuniculi GN=ECU09_0450 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 384
            KQTA K+ GGKAPRK ++ K+   S   +  + K  RF+ G +AL+EIRKYQKST+LLIRK PFQR+VR++ +  +  +RF                  L ED   C +HAKRVT+MPKDI L  +I+
Sbjct:    5 KQTASKALGGKAPRKGISAKSIPSSG-CSPAMPKRTRFKAGALALKEIRKYQKSTDLLIRKRPFQRMVRDLCKG-REGVRFQASAIVAFQEAVENFLTSLMEDAYRCVLHAKRVTLMPKDICLVYKIK 130          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L_BOVIN1.767e-3080.25Histone H3-like OS=Bos taurus PE=2 SV=3[more]
H3L3_LILLO1.266e-2850.00Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE... [more]
H3_ENTHI6.285e-2859.83Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=... [more]
H33_HORVU1.185e-2678.75Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV... [more]
CENPA_CANAL2.471e-2456.56Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_DANRE3.228e-2452.68Histone H3-like centromeric protein A OS=Danio rer... [more]
CENPA_NEUCR5.506e-2451.26Histone H3-like centromeric protein cse-4 OS=Neuro... [more]
CENPA_SCHPO1.602e-2355.08Histone H3-like centromeric protein cnp1 OS=Schizo... [more]
H3_LEIIN2.092e-2348.48Histone H3 OS=Leishmania infantum PE=2 SV=1[more]
H3L_ENCCU1.356e-2246.09Histone H3-like protein OS=Encephalitozoon cunicul... [more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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