DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  109 RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            R+RPGT ALREIR+YQ+S+ELLIRKLPF RLV+E+A+++      +R+                  L EDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   61 RYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 156          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_ASHGO (Histone H3-like centromeric protein CSE4 OS=Ashbya gossypii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   97 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            KKP R+RP  VAL+EIR+YQ+STELLI ++PF RLV+E+   F T    +R+                 GL E TNL A+HAKRVT+M KD+QLARRIRG+
Sbjct:  102 KKPQRYRPSDVALQEIRRYQRSTELLISRMPFARLVKEVTDQFTTVDQQMRWQSMAILALQEASEAYIVGLLEHTNLLALHAKRVTVMRKDMQLARRIRGQ 202          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_YARLI (Histone H3-like centromeric protein CSE4 OS=Yarrowia lipolytica GN=CSE4 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.269e-20
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   25 GGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT----DLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            GG  P  Q       +    T  + KP R++PG  AL+EIR+YQ+ TELLI KLPF R+VRE+A ++      +L++                  LFED NLCAIHAKRVTIM KD+QLARRIRG
Sbjct:   21 GGLHPLGQTRKTLPGERRDTTQKITKP-RYKPGQKALKEIRRYQRGTELLIAKLPFARVVREVALNYLGSEYGNLQWQSMALLALQEAAEAFLVHLFEDVNLCAIHAKRVTIMQKDMQLARRIRG 144          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_XENTR (Histone H3-like centromeric protein A OS=Xenopus tropicalis GN=cenpa PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.300e-20
Identity = 61/130 (46.92%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    7 TARKSTGG-KAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--XXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            T+ +S G   AP ++ A +A  K            RFRPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   L +                    LFED+ LC++HAKRVT+  +DIQLARRIRG
Sbjct:   26 TSTRSPGRPSAPEQRKAPRATPKK-----------RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGLNYSWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQLARRIRG 144          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_XENLA (Histone H3-like centromeric protein A OS=Xenopus laevis GN=cenpa PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.300e-20
Identity = 60/124 (48.39%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   22 TGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--XXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            T  + P  Q   +A+R S       KK  RFRPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   + +                    LFED+ LC++HAKRVT+  +DIQLARRIRG
Sbjct:   29 TSPRRPHAQQQRRASRASP------KK--RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGMNYNWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQLARRIRG 144          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_YEAST (Histone H3-like centromeric protein CSE4 OS=Saccharomyces cerevisiae GN=CSE4 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.394e-19
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  109 RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            ++ P  +AL EIRKYQ+ST+LLI K+PF RLV+E+  +F T   DLR+                 GL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  131 KYTPSELALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 227          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_KLULA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces lactis GN=CSE4 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  109 RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            R++P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F T+   LR+                 GL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:   86 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 182          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_KLUMA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces marxianus GN=CSE4 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.188e-18
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  109 RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            +++P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F +D   LR+                 GL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:   94 KYKPSDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFASDEEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 190          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_CANGA (Histone H3-like centromeric protein CSE4 OS=Candida glabrata GN=CSE4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   97 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            K+   F P  +A+ EI KYQ+ST LLI+K+PF +LV+E+ ++F     DLR+                 GL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  138 KEKRNFAPSKLAMYEIEKYQRSTALLIQKIPFAKLVKEVTEEFAGESQDLRWQSMAILALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 238          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_TETTH (Histone H3-like centromeric protein CNA1 OS=Tetrahymena thermophila GN=CNA1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   40 RKQLATKAARKSAPA---TGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF--KTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 393
            R + +TK  R+S+     +   K   RFRPG  AL+++R+Y ++  LLIRKLPFQRL+REI+     +  LR+                   FED N CA+HAKRVT+M KD+ LA RIRG++
Sbjct:   54 RNKASTKKKRESSGEKYESARDKVIRRFRPGDNALKQLRQYNQTPSLLIRKLPFQRLIREISTRMTEEDSLRWTSFALVLLQTVVEDYMVSFFEDANACALHAKRVTLMSKDLALAARIRGQK 176          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
CENPA_PICFA1.356e-2259.38Histone H3-like centromeric protein CSE4 OS=Pichia... [more]
CENPA_ASHGO1.958e-2152.48Histone H3-like centromeric protein CSE4 OS=Ashbya... [more]
CENPA_YARLI1.269e-2047.20Histone H3-like centromeric protein CSE4 OS=Yarrow... [more]
CENPA_XENTR6.300e-2046.92Histone H3-like centromeric protein A OS=Xenopus t... [more]
CENPA_XENLA6.300e-2048.39Histone H3-like centromeric protein A OS=Xenopus l... [more]
CENPA_YEAST2.394e-1951.55Histone H3-like centromeric protein CSE4 OS=Saccha... [more]
CENPA_KLULA9.097e-1950.52Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_KLUMA1.188e-1849.48Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_CANGA2.026e-1847.52Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_TETTH7.701e-1842.28Histone H3-like centromeric protein CNA1 OS=Tetrah... [more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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