DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_SACSE (Histone H3-like centromeric protein CSE4 OS=Saccharomyces servazzii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   97 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            K   R+RP  +AL EIRKYQ+ST+LLI K+PF RLV+E+  +F      L++                 GL E  NL A+HAKR+T+M KD+QLARRIRG+
Sbjct:  191 KTATRYRPSDLALYEIRKYQQSTDLLISKIPFARLVKEVTDNFILENQHLQWHSMAILALQEASEAYLVGLLEHANLLALHAKRITLMKKDVQLARRIRGQ 291          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  100 KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            +  R+RPG  ALREIR+YQ ST LL+R+ PF R+VREI   F    D R+                  L ED  LC++HA+RVT+ PKD+QLARR+RG
Sbjct:   28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRG 125          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L1_LILLO (Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            +Q   +    +APR Q   +  ++   A    ++P RFRPGTVALREIR+ Q+S   LI   PF RLVRE+A +F  D RF                   F +  +C+IHAKR+ I  KD +LA+ ++GE
Sbjct:   20 RQQPTEEPQDEAPRNQGRQQQQQRPPAAP---RRPRRFRPGTVALREIRRIQRSNVPLIPHSPFMRLVRELAAEFLDDCRFAAETFIMLKEVVEDELVNHFGNVQICSIHAKRIIITVKDFKLAKLLKGE 146          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_HUMAN (Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 57/132 (43.18%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   13 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            R+S   +APR++      T    +  P+ G     H R R G   L+EIRK QKST LLIRKLPF RL REI   F    D  +                  LFED  L  +HA RVT+ PKD+QLARRIRG
Sbjct:    5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_CRIGR (Histone H3-like centromeric protein A OS=Cricetulus griseus GN=CENPA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 54/123 (43.90%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   37 PRKQLATKAARKSAPATGGVKKPHRFRPGT----VALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            PR++  T   R S+P  G  ++  R  PG     + L+EI+K Q+ST+LL+RKLPF R+VREI   F    DL +                  LFED  L  +HA RVTI PKDIQL RRIRG
Sbjct:    3 PRRKPRTPRRRPSSPVPGPSRRSSR--PGKRRKFLWLKEIKKLQRSTDLLLRKLPFSRVVREICGKFTRGVDLCWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTIFPKDIQLTRRIRG 123          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   22 TGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390
            T   A   +   K +R++ P  G  KK +R+RPGTVAL+EIR +QK T LLI    F R VR I          R+                 GLF D+ LCAIHA+RVT+M KD +LARR+ G+
Sbjct:   51 TTSPATGTRRGAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGK 174          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: HCP3_CAEEL (Histone H3-like centromeric protein hcp-3 OS=Caenorhabditis elegans GN=hcp-3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 47/99 (47.47%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   94 VKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRI 381
            V K  R+RPG  AL EIRKYQK+ +LLI+K PF RLVREI Q    F  D R                   +FE ++L + HAKRVT+M  DIQL RR+
Sbjct:  185 VTKTRRYRPGQKALEEIRKYQKTEDLLIQKAPFARLVREIMQTSTPFGADCRIRSDAISALQEAAEAFLVEMFEGSSLISTHAKRVTLMTTDIQLYRRL 283          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_BOVIN (Histone H3-like centromeric protein A OS=Bos taurus GN=CENPA PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 53/129 (41.09%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   13 RKSTGGKAPRKQLATKA--ARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            R+    + PR++ A+ A  A +  P+ G   +P   R  TV L+EIR  QK+T LL+RK PF RL REI   F    D  +                  LFED  L ++HA RVT+ PKD+QLARRIRG
Sbjct:    5 RQKRKPETPRRRPASPAPAAPRPTPSLGTSSRPLARRRHTV-LKEIRTLQKTTHLLLRKSPFCRLAREICVQFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLSLHAGRVTLFPKDVQLARRIRG 132          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 49/101 (48.51%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   94 VKKPH--RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREI--AQDFKT-DLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRI 381
            V K H  +FRPG  AL EIRKYQKST++LI+K PF RLV EI   Q +K+ D R                   +FE + L   HAKRVT+MP DIQL RR+
Sbjct:  239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQLYRRL 339          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 50/126 (39.68%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   37 PRKQLATKAARKSAPATGGVKKPH-------RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387
            PR++  T   R S+PA G  ++         R R   + L+EI+  QKST+LL RK PF  +VREI + F    D  +                  LFED  L ++HA RVT+ PKDIQL RRIRG
Sbjct:    3 PRRKPQTPRRRPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQLTRRIRG 128          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
CENPA_SACSE7.701e-1847.52Histone H3-like centromeric protein CSE4 OS=Saccha... [more]
CENPA_CHICK4.991e-1747.96Histone H3-like centromeric protein A OS=Gallus ga... [more]
H3L1_LILLO6.519e-1738.46Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=... [more]
CENPA_HUMAN7.208e-1643.18Histone H3-like centromeric protein A OS=Homo sapi... [more]
CENPA_CRIGR7.208e-1643.90Histone H3-like centromeric protein A OS=Cricetulu... [more]
HTR12_ARATH1.229e-1541.60Histone H3-like centromeric protein HTR12 OS=Arabi... [more]
HCP3_CAEEL4.672e-1547.47Histone H3-like centromeric protein hcp-3 OS=Caeno... [more]
CENPA_BOVIN1.359e-1441.09Histone H3-like centromeric protein A OS=Bos tauru... [more]
HCP3L_CAEBR6.746e-1448.51Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
CENPA_MOUSE1.151e-1339.68Histone H3-like centromeric protein A OS=Mus muscu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
back to top