DC900123
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_SACSE (Histone H3-like centromeric protein CSE4 OS=Saccharomyces servazzii GN=CSE4 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18 Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 1 Query: 97 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390 K R+RP +AL EIRKYQ+ST+LLI K+PF RLV+E+ +F L++ GL E NL A+HAKR+T+M KD+QLARRIRG+ Sbjct: 191 KTATRYRPSDLALYEIRKYQQSTDLLISKIPFARLVKEVTDNFILENQHLQWHSMAILALQEASEAYLVGLLEHANLLALHAKRITLMKKDVQLARRIRGQ 291
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17 Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1 Query: 100 KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387 + R+RPG ALREIR+YQ ST LL+R+ PF R+VREI F D R+ L ED LC++HA+RVT+ PKD+QLARR+RG Sbjct: 28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRG 125
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H3L1_LILLO (Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=2 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17 Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1 Query: 1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390 +Q + +APR Q + ++ A ++P RFRPGTVALREIR+ Q+S LI PF RLVRE+A +F D RF F + +C+IHAKR+ I KD +LA+ ++GE Sbjct: 20 RQQPTEEPQDEAPRNQGRQQQQQRPPAAP---RRPRRFRPGTVALREIRRIQRSNVPLIPHSPFMRLVRELAAEFLDDCRFAAETFIMLKEVVEDELVNHFGNVQICSIHAKRIIITVKDFKLAKLLKGE 146
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_HUMAN (Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16 Identity = 57/132 (43.18%), Postives = 68/132 (51.52%), Query Frame = 1 Query: 13 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387 R+S +APR++ T + P+ G H R R G L+EIRK QKST LLIRKLPF RL REI F D + LFED L +HA RVT+ PKD+QLARRIRG Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_CRIGR (Histone H3-like centromeric protein A OS=Cricetulus griseus GN=CENPA PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16 Identity = 54/123 (43.90%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 37 PRKQLATKAARKSAPATGGVKKPHRFRPGT----VALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387 PR++ T R S+P G ++ R PG + L+EI+K Q+ST+LL+RKLPF R+VREI F DL + LFED L +HA RVTI PKDIQL RRIRG Sbjct: 3 PRRKPRTPRRRPSSPVPGPSRRSSR--PGKRRKFLWLKEIKKLQRSTDLLLRKLPFSRVVREICGKFTRGVDLCWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTIFPKDIQLTRRIRG 123
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15 Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 1 Query: 22 TGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 390 T A + K +R++ P G KK +R+RPGTVAL+EIR +QK T LLI F R VR I R+ GLF D+ LCAIHA+RVT+M KD +LARR+ G+ Sbjct: 51 TTSPATGTRRGAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGK 174
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: HCP3_CAEEL (Histone H3-like centromeric protein hcp-3 OS=Caenorhabditis elegans GN=hcp-3 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15 Identity = 47/99 (47.47%), Postives = 57/99 (57.58%), Query Frame = 1 Query: 94 VKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRI 381 V K R+RPG AL EIRKYQK+ +LLI+K PF RLVREI Q F D R +FE ++L + HAKRVT+M DIQL RR+ Sbjct: 185 VTKTRRYRPGQKALEEIRKYQKTEDLLIQKAPFARLVREIMQTSTPFGADCRIRSDAISALQEAAEAFLVEMFEGSSLISTHAKRVTLMTTDIQLYRRL 283
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_BOVIN (Histone H3-like centromeric protein A OS=Bos taurus GN=CENPA PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14 Identity = 53/129 (41.09%), Postives = 69/129 (53.49%), Query Frame = 1 Query: 13 RKSTGGKAPRKQLATKA--ARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387 R+ + PR++ A+ A A + P+ G +P R TV L+EIR QK+T LL+RK PF RL REI F D + LFED L ++HA RVT+ PKD+QLARRIRG Sbjct: 5 RQKRKPETPRRRPASPAPAAPRPTPSLGTSSRPLARRRHTV-LKEIRTLQKTTHLLLRKSPFCRLAREICVQFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLSLHAGRVTLFPKDVQLARRIRG 132
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14 Identity = 49/101 (48.51%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 94 VKKPH--RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREI--AQDFKT-DLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRI 381 V K H +FRPG AL EIRKYQKST++LI+K PF RLV EI Q +K+ D R +FE + L HAKRVT+MP DIQL RR+ Sbjct: 239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQLYRRL 339
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13 Identity = 50/126 (39.68%), Postives = 65/126 (51.59%), Query Frame = 1 Query: 37 PRKQLATKAARKSAPATGGVKKPH-------RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 387 PR++ T R S+PA G ++ R R + L+EI+ QKST+LL RK PF +VREI + F D + LFED L ++HA RVT+ PKDIQL RRIRG Sbjct: 3 PRRKPQTPRRRPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQLTRRIRG 128 The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 211
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bpback to top |