DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEEL (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis elegans GN=cpar-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   94 VKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRI 381
            + K  R+RPG  AL EIRKYQ+S +LLI K PF RLVREI Q    F +DLR                   +F+ ++L + H+KR T+   D+QL RR+
Sbjct:  158 ISKTRRYRPGQKALEEIRKYQESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINALQEASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRL 256          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETTR (Histone H3.2 (Fragment) OS=Tetrahymena tropicalis PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETSO (Histone H3.2 (Fragment) OS=Tetrahymena sonneborni PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETRO (Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETPR (Histone H3.2 (Fragment) OS=Tetrahymena paravorax PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETPI (Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETPA (Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETNI (Histone H3.2 (Fragment) OS=Tetrahymena nippisingi PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETNA (Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETMI (Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41          
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
HCP3L_CAEEL1.503e-1342.42Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
H32_TETTR1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena tropicalis ... [more]
H32_TETSO1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena sonneborni ... [more]
H32_TETRO1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena rostrata PE... [more]
H32_TETPR1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena paravorax P... [more]
H32_TETPI1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena pigmentosa ... [more]
H32_TETPA1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena patula PE=3... [more]
H32_TETNI1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena nippisingi ... [more]
H32_TETNA1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena nanneyi PE=... [more]
H32_TETMI1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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