DC900123

Overview
NameDC900123
Unique NameDC900123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETMA (Histone H3.2 (Fragment) OS=Tetrahymena malaccensis PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETLE (Histone H3.2 (Fragment) OS=Tetrahymena leucophrys PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETHY (Histone H3.2 (Fragment) OS=Tetrahymena hyperangularis PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETFU (Histone H3.2 (Fragment) OS=Tetrahymena furgasoni PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETEL (Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETCU (Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETCA (Histone H3.2 (Fragment) OS=Tetrahymena capricornis PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETAU (Histone H3.2 (Fragment) OS=Tetrahymena australis PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETAM (Histone H3.2 (Fragment) OS=Tetrahymena americanus PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG KAPRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DC900123 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.835e-12
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 111
            KQTARKSTG +APRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    5 KQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
The following BLAST results are available for this feature:
BLAST of DC900123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_TETMA1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena malaccensis... [more]
H32_TETLE1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena leucophrys ... [more]
H32_TETHY1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena hyperangula... [more]
H32_TETFU1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena furgasoni P... [more]
H32_TETEL1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE... [more]
H32_TETCU1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=... [more]
H32_TETCA1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena capricornis... [more]
H32_TETAU1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena australis P... [more]
H32_TETAM1.662e-1291.89Histone H3.2 (Fragment) OS=Tetrahymena americanus ... [more]
H32_TETBO4.835e-1289.19Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]

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Properties
Property NameValue
Genbank descriptionDC900123 VSS Citrus sinensis cDNA clone VS27V40 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900123 ID=DC900123; Name=DC900123; organism=Citrus sinensis; type=EST; length=555bp
AAGCAAACCGCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACT
GGCGACCAAGGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGA
AGCCTCACAGGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAG
TACCAGAAGAGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATT
GGTGAGGGAAATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCA
GCGCTGTTGCTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTG
TTCGAGGACACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTAT
GCCCAAGGACATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGG
AACTTTCTGATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTT
TGGTCAATATTTGGGGTTTAGATTTATGTTTGGATGTCTATCCGATGGAT
TAGATCGGGTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGG
GTTTT
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