CN186000

Overview
NameCN186000
Unique NameCN186000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7804 contig Csv1_Contig7804:174..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.980e-49
Identity = 97/214 (45.33%), Postives = 135/214 (63.08%), Query Frame = 3
Query:   96 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  Q L+
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH 224          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.980e-49
Identity = 97/214 (45.33%), Postives = 135/214 (63.08%), Query Frame = 3
Query:   96 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  Q L+
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH 224          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.893e-48
Identity = 96/214 (44.86%), Postives = 135/214 (63.08%), Query Frame = 3
Query:   96 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP +KPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  Q L+
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH 224          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.021e-46
Identity = 91/213 (42.72%), Postives = 134/213 (62.91%), Query Frame = 3
Query:   87 ESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDV 725
            +  +S++  +        + +F + ++    E   ++I DEL+LDGN + NLA+F  T ++     +M   I+KN +D DEYP + E++NRC++I+A L+NAP  DS   +G  T GSSEA ML GLA K  W+  RK  G P+DKPNIVTG  VQ+CW KFA YF++E++E+ +  G YVM+  + ++ VDENTI V   LG T   ++EDV
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDV 216          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.946e-46
Identity = 95/226 (42.04%), Postives = 140/226 (61.95%), Query Frame = 3
Query:   81 FSESDESIHST-----FASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            +SE+D+  H +     F S     S+P++ + +  +    AYQ++ D+LM +GN R NLA+F  T+ME E + LM   + KN +D  EYP T EL+NRCVNI+A L+NAP E S   +G  TVGSSEA ML GLA K +W+N  +  G      +PN++  +  QVCWEKF  Y++V+++ V + + +  +D  K  E+VDE TI +  ILG T  G+F+D+ LL+
Sbjct:    3 YSENDKRKHESYRIPLFGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKEMS--YLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLD 226          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 92/227 (40.53%), Postives = 140/227 (61.67%), Query Frame = 3
Query:   63 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            M+  K   +  E +   F S   +  LP++ + + SI    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KLM   + KN +D  EYP TTE++NRCVN+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++EV +   +  ++  K ++ VDE TI V  I+G T  G ++D++ L+
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALD 225          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 92/227 (40.53%), Postives = 141/227 (62.11%), Query Frame = 3
Query:   63 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            M+  K   +  E +   F S   +  LP++ + + SI    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KLM   + KN +D  EYP TTE++NRCVN+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++EV + + +  ++  K ++ VDE TI V  I+G T  G ++D++ L+
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALD 225          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 91/210 (43.33%), Postives = 133/210 (63.33%), Query Frame = 3
Query:  114 FASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            F S     S+P++ + +  +    AYQ++ D+LM +GN R NLA+F  T+ME E + LM   + KN +D  EYP T EL+NRCVNI+A L+NAP + S   +G  TVGSSEA ML GLA K +W+N  +  G      +PN++  +  QVCWEKF  Y++V+++ V + + +  +D  K  ++VDE TI V  ILG T  G+F+D+QLL+
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAPKDMS--YLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLD 226          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.027e-42
Identity = 87/195 (44.62%), Postives = 127/195 (65.13%), Query Frame = 3
Query:  147 RFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQ 728
            ++++P+  +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+   + KN  D DEYP   EL  RC++++A+L++A     E  +G  T GSSEAIML GLA K++W+++ K  GK   KPNI+  +  QV  EKF RYFEVE + V +S   ++++DP    + VDENTI    ILG+T  G  E+V+
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWHA--NPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVE 251          
BLAST of CN186000 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.716e-41
Identity = 88/227 (38.77%), Postives = 136/227 (59.91%), Query Frame = 3
Query:   63 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVQLLN 737
            M+ SK   ES   +   F S      +P++T+ +  +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KLM   + KN +D  EYP T EL+NRCVNIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+  LN
Sbjct:    1 MLYSKENKES--YLEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALN 223          
The following BLAST results are available for this feature:
BLAST of CN186000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECOL64.980e-4945.33Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO574.980e-4945.33Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL61.893e-4844.86Glutamate decarboxylase beta OS=Escherichia coli O... [more]
GADB_DICDI3.021e-4642.72Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCEC_LISIN3.946e-4642.04Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_LACLM6.731e-4640.53Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA6.731e-4640.53Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO2.558e-4543.33Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_YEAST2.027e-4244.62Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEB_LISIN1.716e-4138.77Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186000 ID=CN186000; Name=CN186000; organism=Citrus sinensis; type=EST; length=737bp
AGGCTGACACCAAAAGAAAAAAAAAATCATTATTAAATTTTGTTTGTTTT
AATCTTTCAATCATGGTTCTTTCAAAGACATTTTCCGAATCCGATGAGTC
AATTCACTCCACCTTTGCCTCTCGCTACGTCCGAAACTCTCTTCCTCGGT
TCACGATGCCGGAGAACTCGATACCGAAGGAGGCGGCGTACCAGATCATA
AACGACGAGCTGATGCTCGACGGGAATCCAAGATTGAACTTGGCTTCCTT
CGTCACAACGTGGATGGAGCCTGAATGTGACAAGCTTATGATGGCTGCCA
TTAACAAGAACTACGTTGACATGGATGAGTATCCTGTCACCACCGAGCTT
CAGAATCGATGTGTGAACATTATAGCCCGACTGTTCAATGCTCCACTGGA
GGACTCCGAGACGGCTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCCA
TAATGTTGGCCGGCCTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAAG
GCTGAAGGAAAGCCCTTTGACAAACCCAACATTGTCACTGGAGCGAACGT
TCAGGTCTGCTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTGAAGG
AAGTGAAGCTGTCGGAAGGCTACTACGTGATGGACCCAGCCAAAGCTGTA
GAAATGGTGGATGAAAACACTATCTGTGTTGCTGCTATTCTGGGTTCTAC
TCTCAATGGAGAATTTGAAGATGTNCAGCTCTTGAAC
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