CN185997

Overview
NameCN185997
Unique NameCN185997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185997_ssr160 microsatellite CN185997_ssr160:160..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:285..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.941e-47
Identity = 97/159 (61.01%), Postives = 117/159 (73.58%), Query Frame = -1
Query:  253 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 726
            MS+IPS FG RR+NV +PFSLD+WDPF  + L ++   +    +ET+ FAN  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKN+K HRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT           K+I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.558e-47
Identity = 102/157 (64.97%), Postives = 116/157 (73.89%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVWDPFDGFL-----SSALTNAPSSAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR+NVFDPFSLD+WDPFDGF      SS+ +  PS  R    ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G ILQISGER+KEQEEK D+ HRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.252e-46
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = -1
Query:  253 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 726
            MSLIPSIFGG R+NVFDPFSLD+WDPF  F      + P+S+   E S F N R+DWKET +AHV KAD+PGL+         + R+LQISGER+ E+E+KND  HRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.252e-46
Identity = 102/159 (64.15%), Postives = 118/159 (74.21%), Query Frame = -1
Query:  253 MSLIPSIFGGRR-TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 726
            MSLIP IFG RR T+VFDPFS+DV+DPF       L    S++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KND  HRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 89/139 (64.03%), Postives = 108/139 (77.70%), Query Frame = -1
Query:  310 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 726
            MS+IPS F  +R+N+FDPFSLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++         +GR+LQISGER +EQEEK+D  HRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.462e-46
Identity = 95/157 (60.51%), Postives = 113/157 (71.97%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSS---------ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR+NVFDPFSLD+WDPFDGF   + + +  S         + ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGERSKEQEEK DK HRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.236e-45
Identity = 94/148 (63.51%), Postives = 112/148 (75.68%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDK HRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.753e-45
Identity = 93/148 (62.84%), Postives = 112/148 (75.68%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDK HRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 93/150 (62.00%), Postives = 111/150 (74.00%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVWDPFDGFLSSALTNA--PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR+NVFDPFSLD+WDPFDGF   + + +  P +  + + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK DK HRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.046e-44
Identity = 99/159 (62.26%), Postives = 118/159 (74.21%), Query Frame = -1
Query:  253 MSLIPSIFGGRRTN-VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 726
            MSLIP IFG RR++ +FDPFS+DV+DPF       L    +++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KNDK  RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN185997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP12_DAUCA2.941e-4761.0118.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ8.558e-4764.9717.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN3.252e-4661.2517.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE3.252e-4664.1517.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_HELAN5.547e-4664.0317.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS181_ORYSJ9.462e-4660.5118.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ1.236e-4563.5116.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ2.753e-4562.8416.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ3.596e-4562.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLPE1.046e-4462.2617.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185997 ID=CN185997; Name=CN185997; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTCGCATTAAAAATATATTTTATTGCATCACACTTC
CATTTTTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCCGAAGCTCT
TGCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAAG
CTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAAA
TTGAGGAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCACT
TAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTT
AGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGCT
CCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTG
CTCCTCTCGACGCGATGCCGCTTGTCATTCTTCTCTTCCTGCTCCTTGCT
CCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTCA
CTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTGA
GGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCCT
AGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAAG
GATCCCATACATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCCA
CCGAAGATGCTTGGAATGAGTGACATTATGGCAAACTGGGGCGCTAATTA
AATGCTCAACAACTT
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