CN185997

Overview
NameCN185997
Unique NameCN185997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185997_ssr160 microsatellite CN185997_ssr160:160..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:285..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.046e-44
Identity = 94/148 (63.51%), Postives = 113/148 (76.35%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR+NVFDPF+ D WDPFDG   S +    +S R+T+ FANAR+DWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDK HRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.366e-44
Identity = 94/145 (64.83%), Postives = 116/145 (80.00%), Query Frame = -1
Query:  307 MSLIPSIF--GGRRTNVFDPFSLD-VWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 726
            MSLIP+ +   GRR+N+FDPFSLD +WDPF G L S L+  P S  A ET+ FANARIDWKETP+AHVFKADLPG++         +G +L+ISG+R++E+EEKND  HRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.192e-44
Identity = 94/155 (60.65%), Postives = 110/155 (70.97%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVWDPFDGF-------LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR N FDPFSLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFKAD+PGL+         +G ILQISGERS+EQEEK+DK HRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.781e-44
Identity = 98/161 (60.87%), Postives = 119/161 (73.91%), Query Frame = -1
Query:  253 MSLIPSIFGGRRTN-VFDPFSLDVWDPFD--GFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 726
            MSLIP IFG RR++ +FDPFS+DV+DPF   GF S+       ++ E+S FAN RIDWKETP+ HVFK DLPGL+         E R+LQISGER+ E+E+KNDK HR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPST-------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.973e-43
Identity = 93/159 (58.49%), Postives = 113/159 (71.07%), Query Frame = -1
Query:  253 MSLIPSIFGG-RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 726
            MS+IPS F   RR+N+FDPFSLDVWDPF    SS+L+      RE S   NAR+DW+ETP+AHVFKADLPGL+         E  +L+ISGER  E+E+KND  HRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT           K+I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.412e-41
Identity = 90/149 (60.40%), Postives = 111/149 (74.50%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RR+NVFDPF+ D+W DPFD F S     +  S+ ET+ FANAR+DWKETP+AHVFK DLPG++         +G +L +SGERS+E+E+KNDK HRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.017e-41
Identity = 86/142 (60.56%), Postives = 106/142 (74.65%), Query Frame = -1
Query:  256 DPFSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIS 678
            DPFSLDVWDPF  F  +++  +A S  +E S F + RIDWKETP+AHVFKADLPGL+         + R+LQISGER+ E+E+KND+ HRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K+IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.042e-40
Identity = 89/149 (59.73%), Postives = 109/149 (73.15%), Query Frame = -1
Query:  253 RRTNVFDPFSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 696
            RRTNVFDPF+ D+W DPFD F  S +        ET+ FANAR+DWKETP+AHVFKADLPG++         +G +L +SGER+KE+E+KNDK HRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT           KAI+ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.029e-39
Identity = 84/142 (59.15%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  307 MSLIPSIFGGRR--TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 726
            MSLIPS FG  R   ++FDPFSLDVWDPF       L    S + ETS   NAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D  HRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.578e-39
Identity = 86/143 (60.14%), Postives = 101/143 (70.63%), Query Frame = -1
Query:  307 MSLIPSIFGGRR---TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 726
            MSLIPS FG  R    N+FDPFSLDVWDPF           PSS+  +S  ANAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D  HRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKEL------QFPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CN185997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS16C_ORYSJ1.046e-4463.5116.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_CHERU1.366e-4464.8318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS177_ORYSJ5.192e-4460.6517.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC6.781e-4460.8717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17B_ARATH1.973e-4358.4917.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16A_WHEAT2.412e-4160.4016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA7.017e-4160.5618.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16B_WHEAT2.042e-4059.7316.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH5.029e-3959.1517.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH8.578e-3960.1417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185997 ID=CN185997; Name=CN185997; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTCGCATTAAAAATATATTTTATTGCATCACACTTC
CATTTTTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCCGAAGCTCT
TGCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAAG
CTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAAA
TTGAGGAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCACT
TAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTT
AGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGCT
CCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTG
CTCCTCTCGACGCGATGCCGCTTGTCATTCTTCTCTTCCTGCTCCTTGCT
CCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTCA
CTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTGA
GGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCCT
AGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAAG
GATCCCATACATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCCA
CCGAAGATGCTTGGAATGAGTGACATTATGGCAAACTGGGGCGCTAATTA
AATGCTCAACAACTT
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