CN185997

Overview
NameCN185997
Unique NameCN185997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = -1
Query:  307 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 567
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E + K  R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  307 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRH-RVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 618
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    +  R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  307 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKRH-RVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 618
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    ++ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  307 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKND--KRHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 582
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  + H  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CN185997 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 41/119 (34.45%), Postives = 56/119 (47.06%), Query Frame = -1
Query:  310 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKR------HRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 648
            F G     L   P      S  A A +DW ETP +HV + ++PGL          +G +L + G       EK  +R      H  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
The following BLAST results are available for this feature:
BLAST of CN185997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_MAIZE1.801e-1245.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS177_ARATH1.801e-1237.3817.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS176_ARATH1.525e-1135.5117.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS178_ORYSJ3.397e-1137.8417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ5.794e-1134.4516.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002D06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185997 ID=CN185997; Name=CN185997; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTCGCATTAAAAATATATTTTATTGCATCACACTTC
CATTTTTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCCCGAAGCTCT
TGCAAACACACAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAAG
CTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTTCGTACCAAA
TTGAGGAGCAAACCAAAGACACAATCTTGAAAACATTTACACTTATCACT
TAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTT
AGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGCT
CCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTG
CTCCTCTCGACGCGATGCCGCTTGTCATTCTTCTCTTCCTGCTCCTTGCT
CCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTCA
CTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTGA
GGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCCT
AGCCGAAGACGGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAAG
GATCCCATACATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCCA
CCGAAGATGCTTGGAATGAGTGACATTATGGCAAACTGGGGCGCTAATTA
AATGCTCAACAACTT
back to top