DC900121 | Citrus Genome Database

Overview


Name	DC900121
Unique Name	DC900121
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	740

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9095	contig	Csv1_Contig9095:77..816.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SHISS (Enolase OS=Shigella sonnei (strain Ss046) GN=eno PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SHIFL (Enolase OS=Shigella flexneri GN=eno PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SHIDS (Enolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=eno PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SHIBS (Enolase OS=Shigella boydii serotype 4 (strain Sb227) GN=eno PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SHIB3 (Enolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=eno PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SERP5 (Enolase OS=Serratia proteamaculans (strain 568) GN=eno PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 85/154 (55.19%), Postives = 116/154 (75.32%), Query Frame = -1

Query:  243 LKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 704
            L+DL K     YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG+ A + G K
Sbjct:  277 LEDLTKQ----YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGSRAPFNGLK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SALTY (Enolase OS=Salmonella typhimurium GN=eno PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SALTI (Enolase OS=Salmonella typhi GN=eno PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SALSV (Enolase OS=Salmonella schwarzengrund (strain CVM19633) GN=eno PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

[Close]

BLAST of DC900121 vs. ExPASy Swiss-Prot
Match: ENO_SALPK (Enolase OS=Salmonella paratyphi A (strain AKU_12601) GN=eno PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1

Query:  243 YPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGAK 671
            YPIVSIED  D+ DW+ +A  T  +G+K+Q+VGDDL VTN K +++ I++   N++L+K NQIGS+TE++ A++M+K AG+  + SHRSGETED  IADL+VG A GQIKTG+  RS+R+AKYNQL+RIEE LG +A Y G K
Sbjct:  284 YPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK 426

The following BLAST results are available for this feature:

BLAST of DC900121 vs. ExPASy Swiss-Prot

BLAST of DC900121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ENO_SHISS	7.760e-42	57.34	Enolase OS=Shigella sonnei (strain Ss046) GN=eno P...	[more]
ENO_SHIFL	7.760e-42	57.34	Enolase OS=Shigella flexneri GN=eno PE=3 SV=2	[more]
ENO_SHIDS	7.760e-42	57.34	Enolase OS=Shigella dysenteriae serotype 1 (strain...	[more]
ENO_SHIBS	7.760e-42	57.34	Enolase OS=Shigella boydii serotype 4 (strain Sb22...	[more]
ENO_SHIB3	7.760e-42	57.34	Enolase OS=Shigella boydii serotype 18 (strain CDC...	[more]
ENO_SERP5	7.760e-42	55.19	Enolase OS=Serratia proteamaculans (strain 568) GN...	[more]
ENO_SALTY	7.760e-42	57.34	Enolase OS=Salmonella typhimurium GN=eno PE=3 SV=2	[more]
ENO_SALTI	7.760e-42	57.34	Enolase OS=Salmonella typhi GN=eno PE=3 SV=2	[more]
ENO_SALSV	7.760e-42	57.34	Enolase OS=Salmonella schwarzengrund (strain CVM19...	[more]
ENO_SALPK	7.760e-42	57.34	Enolase OS=Salmonella paratyphi A (strain AKU_1260...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900121 VSS Citrus sinensis cDNA clone VS27V36 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900121 ID=DC900121; Name=DC900121; organism=Citrus sinensis; type=EST; length=740bp
TTCAACTAGATACTCATTCTAATAAAACATGCTCTAGGAAATGGTTCCTC
ATACAGCAAGGTTCAAGCTCTCAGACAAAAACTGTGTCAAAATTATTGAG
GAAATATCTTGGGTCACAAAATGCTAAAAACCCATAAAAATCCATTTTAC
ATAACTTATTGAAGTAAACCTCCATTGCTCAAATCCAGCACCACACCAGA
TCAGCATCTCAAACTCTAGTAGGGTTCAACAGGGGCACGGAACTTGGCAC
CAGCATAAACTGCTTCAGCACCGAGCTCTTCTTCAATTCTCAGAAGCTGA
TTATACTTTGCAAGACGCTCTGACCTGCATGGTGCTCCTGTCTTAATTTG
ACCCGTGGCCAAGCCCACTGAGAGATCGGCAATGAAAGTATCTTCAGTCT
CACCACTGCGGTGGCTGGCCATCACACCCCACCCAGCTTGCTTGGACATT
CTGACGGCTTCAATGCTCTCAGTTACAGATCCAATTTGATTAACCTTGAG
AAGGAGGGCGTTGCAGGTCTTCTCTTTGATAGCCTTCTCAACCCTCTTAG
GATTGGTGACCAAAAGATCATCTCCAACAATTTGTACTTTTTCTCCAACC
TCACTGGTTAGCTTGGCATAGTGCTCCCAGTCGTCTTGGTCAAATGGATC
TTCAATTGATACAATAGGATAATCAGAGATGAATGACTTATAGAGATCTT
TGAGTGCATTTNCTGAGATCTTTGGGGACCATCATTGGTC