CN185991

Overview
NameCN185991
Unique NameCN185991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig132 contig Csv1_Contig132:1..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            KRIL+E+K++Q +P     + P+ E++F WQ  I GP ++ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            KRIL+E+K++Q +P     + P+ E++F WQ  I GP ++ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.284e-13
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            +RIL+E+KE+Q +P     + P  E++F WQ  I GP ++ + GG++   I  P +YPFKPP  +  T   +    +   ICL I     + W P+ ++   L+++ + + T+PN
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILK---DQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPN 460
            K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+ PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L+++I+ +   PN
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN-IYET-GDVCISIL--HPPVDDPQSGELPSERWNPTQNVRTILLSVISLL-NEPN 135          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPN 460
            K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+ PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L+++I+ +   PN
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN-IYET-GDVCISIL--HPPVDDPQSGELPSERWNPTQNVRTILLSVISLL-NEPN 135          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 42/156 (26.92%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  128 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSI-----SNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDE 574
            +L E K +  NPS+ F     E+N+ EW   ++GP DT +EGG++  +I  P +YP++PP     +   +    +  K+C+SI     +      W P+  + T L+++I+ +      +  ++D  K  R+ L  +  E+ P       +K +DE
Sbjct:    6 LLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKSLDE 161          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 38/115 (33.04%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            KRI +E++++Q +P     + P  +++F+WQ  I GP D+ F GG++   I  P +YPFKPP  +F     +    +   ICL I     E W P+ +V   L+++ + + T+PN
Sbjct:    4 KRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILK---EQWSPALTVSKVLLSICSLL-TDPN 114          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  134 QEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEER 499
            +++KE+Q NP   F + L  +++IFEW+  I GP DT +EGG +H  +  P +YP  PP     T        PNG      ++C+SI   HP            E W P  S  T L+++I+ + +  + +  ++D  KE R
Sbjct:   12 KQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNG------EVCISIL--HPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFR 146          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  122 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            KRI +E+ ++  +P     + P+ E++F WQ  I GPGD+ + GG++   I  P +YPFKPP     T    PN    +   ICL I     + W P+ ++   L++ I  M T+PN
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLS-ICSMLTDPN 114          
The following BLAST results are available for this feature:
BLAST of CN185991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBC4_SOLLC8.151e-1433.91Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH1.065e-1333.04Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH1.390e-1333.04Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC29_ARATH5.284e-1332.17Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UB2R1_MOUSE9.013e-1335.38Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN9.013e-1335.38Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFM21.177e-1226.92Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC30_ARATH1.537e-1233.04Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC15_SCHPO1.537e-1231.47Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC1_COLGL2.008e-1234.19Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185991 ID=CN185991; Name=CN185991; organism=Citrus sinensis; type=EST; length=607bp
CTTTAAAATGTCTACTCGTTCGCATACAAAGTCCTGATAGCCCTTGAGGA
CGTGAACCGATCGAAATCAGATCTGAAATCCAATGGCGGAAGACAGGTAC
AATTTGAAAAATCCCCCGGTGAAGAGAATCCTACAGGAGGTCAAAGAGAT
GCAATCAAATCCGTCAGATGATTTCATGAGCCTCCCTCTCGAGGAGAATA
TATTTGAATGGCAATTTGCGATCAGGGGACCGGGTGATACTGAATTTGAA
GGTGGGATTTATCATGGTCGGATTCAGTTACCTGCAGAATACCCATTCAA
GCCTCCTTCATTTATGCTCTTAACACCAAATGGGCGTTTTGAAACTCAGA
CCAAAATATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCA
TCTTGGAGTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCAC
CAATCCAAATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGC
GTGCTCTGGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCT
GAACGTCAAAAACTCATTGATGAGATCCATGAATATATGTTAAGCAAGGC
ACCCCCT
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