CN185991

Overview
NameCN185991
Unique NameCN185991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig132 contig Csv1_Contig132:1..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            +KRI +E+ ++  +P     + P+ E++F WQ  I GP D+ + GG++   I  P +YPFKPP     T    PN    +   ICL I     + W P+ ++   L++ I  M T+PN
Sbjct:    3 LKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLS-ICSMLTDPN 114          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 39/156 (25.00%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  128 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSI-----SNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDE 574
            ++ E + +  NPS++F     E ++ EW   +RGP DT +EGG++  ++  P EYP+ PP     +   +       K+C+SI     +      W P+  + T L+++I+ +      +  ++D  K  R+ +  +  E+ P       +K +DE
Sbjct:    6 LMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKSLDE 161          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 35/120 (29.17%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 469
            +KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    3 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 35/120 (29.17%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 469
            +KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    3 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 35/120 (29.17%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 469
            +KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    3 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 36/118 (30.51%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 460
            +KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ + GG++   I  P +YPFKPP     T    PN    +   ICL I     + W P+ ++   L+++ + + T+PN
Sbjct:    3 LKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 466
            +KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    6 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 466
            +KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    6 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 466
            +KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    6 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of CN185991 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  119 VKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 466
            +KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    6 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
The following BLAST results are available for this feature:
BLAST of CN185991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBC1_MAGGR9.965e-1233.05Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC_ASFWA1.301e-1125.00Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UB2D1_MOUSE1.301e-1129.17Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.301e-1129.17Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.301e-1129.17Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC4_SCHPO1.700e-1130.51Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UB2G2_PONAB2.220e-1131.16Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE2.220e-1131.16Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN2.220e-1131.16Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN2.220e-1131.16Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185991 ID=CN185991; Name=CN185991; organism=Citrus sinensis; type=EST; length=607bp
CTTTAAAATGTCTACTCGTTCGCATACAAAGTCCTGATAGCCCTTGAGGA
CGTGAACCGATCGAAATCAGATCTGAAATCCAATGGCGGAAGACAGGTAC
AATTTGAAAAATCCCCCGGTGAAGAGAATCCTACAGGAGGTCAAAGAGAT
GCAATCAAATCCGTCAGATGATTTCATGAGCCTCCCTCTCGAGGAGAATA
TATTTGAATGGCAATTTGCGATCAGGGGACCGGGTGATACTGAATTTGAA
GGTGGGATTTATCATGGTCGGATTCAGTTACCTGCAGAATACCCATTCAA
GCCTCCTTCATTTATGCTCTTAACACCAAATGGGCGTTTTGAAACTCAGA
CCAAAATATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCA
TCTTGGAGTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCAC
CAATCCAAATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGC
GTGCTCTGGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCT
GAACGTCAAAAACTCATTGATGAGATCCATGAATATATGTTAAGCAAGGC
ACCCCCT
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