DC900119

Overview
NameDC900119
Unique NameDC900119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_THEP1 (S-adenosylmethionine synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 55/107 (51.40%), Postives = 79/107 (73.83%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            PT VDRS  Y+ R  AK++VA GLA + ++Q+SYAIGV +P+S+ +D+YGT K+ + ++LK++ E FDFRPG +   L+L R     + KTAAYGHFGR++ +FTWE
Sbjct:  278 PTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_THEMA (S-adenosylmethionine synthetase OS=Thermotoga maritima GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 55/107 (51.40%), Postives = 79/107 (73.83%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            PT VDRS  Y+ R  AK++VA GLA + ++Q+SYAIGV +P+S+ +D+YGT K+ + ++LK++ E FDFRPG +   L+L R     + KTAAYGHFGR++ +FTWE
Sbjct:  278 PTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_NEIG2 (S-adenosylmethionine synthetase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V E FD RP  +   LDL R   G   K+AAYGHFGR++P+FTWE
Sbjct:  272 PSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLIALVCEHFDLRPKGIVQMLDLLRPIYG---KSAAYGHFGREEPEFTWE 375          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_NEIG1 (S-adenosylmethionine synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=metK PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V E FD RP  +   LDL R   G   K+AAYGHFGR++P+FTWE
Sbjct:  272 PSKVDRSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLIALVCEHFDLRPKGIVQMLDLLRPIYG---KSAAYGHFGREEPEFTWE 375          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURXL (S-adenosylmethionine synthetase OS=Burkholderia xenovorans (strain LB400) GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA RC++QVSYAIGV +P SV V+++GTG++ D  I ++V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRCLIQVSYAIGVAQPTSVMVNTFGTGRVSDAVITRLVQEHFDLRPKGIIQMLDLLR---PIYEKSAAYGHFGREEPEFTWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_AZOSE (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain EbN1) GN=metK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA RC VQV+YAIGV  P+S+ ++++GTG+I D++I+++V+  FD RP  +   L+L R   G   KTAAYGHFGRD+P+FTWE
Sbjct:  271 PSKVDRSAAYAGRWVAKNIVAAGLADRCEVQVAYAIGVARPVSMMIETFGTGRITDEKIVELVQRHFDLRPKAIIQELNLLRPIYG---KTAAYGHFGRDEPEFTWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_POLNA (S-adenosylmethionine synthetase OS=Polaromonas naphthalenivorans (strain CJ2) GN=metK PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLAR+C +QV+YAIGV +P++V V + GTG IPD+++  +V+E FD RP  +   LDL R     + KTAAYGHFGRD+P+FTWE
Sbjct:  278 PSKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVAKPMNVTVYTEGTGVIPDEKLSALVQEHFDLRPNGIIQMLDLLR---PIYEKTAAYGHFGRDEPEFTWE 381          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_DELAS (S-adenosylmethionine synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=metK PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 61/107 (57.01%), Postives = 75/107 (70.09%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            PT VDRS AY  R  AK+IVA GLAR+C +QV+YAIGV  P+++ V + GTG IPD EI K+V   FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  276 PTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDAEIAKLVAAHFDLRPKGIIQMLDLLR---PIYSKTAAYGHFGREEPEFTWE 379          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK2_PONAB (S-adenosylmethionine synthetase isoform type-2 OS=Pongo abelii GN=MAT2A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query:    5 TNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 343
            T VDRS AY  R  AKS+V  GL RR +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  288 TKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK2_MOUSE (S-adenosylmethionine synthetase isoform type-2 OS=Mus musculus GN=Mat2a PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query:    5 TNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 343
            T VDRS AY  R  AKS+V  GL RR +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  288 TKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
The following BLAST results are available for this feature:
BLAST of DC900119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_THEP13.142e-2651.40S-adenosylmethionine synthetase OS=Thermotoga petr... [more]
METK_THEMA3.142e-2651.40S-adenosylmethionine synthetase OS=Thermotoga mari... [more]
METK_NEIG23.142e-2655.14S-adenosylmethionine synthetase OS=Neisseria gonor... [more]
METK_NEIG13.142e-2655.14S-adenosylmethionine synthetase OS=Neisseria gonor... [more]
METK_BURXL3.142e-2655.14S-adenosylmethionine synthetase OS=Burkholderia xe... [more]
METK_AZOSE3.142e-2655.14S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_POLNA4.103e-2656.07S-adenosylmethionine synthetase OS=Polaromonas nap... [more]
METK_DELAS4.103e-2657.01S-adenosylmethionine synthetase OS=Delftia acidovo... [more]
METK2_PONAB4.103e-2654.87S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MOUSE4.103e-2654.87S-adenosylmethionine synthetase isoform type-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC900119 VSS Citrus sinensis cDNA clone VS27V34 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900119 ID=DC900119; Name=DC900119; organism=Citrus sinensis; type=EST; length=696bp
CCCTACTAACGTGGATAGGAGTGGTGCATACATTGTTAGGCAGGCTGCTA
AGAGCATTGTTGCAAACGGGCTTGCTCGCAGGTGCATTGTCCAAGTCTCC
TATGCCATTGGTGTGCCTGAGCCATTGTCTGTTTTTGTGGACTCATATGG
AACCGGCAAGATTCCTGACAAGGAGATCCTCAAAATTGTGAAGGAAAGCT
TTGATTTCAGGCCAGGAATGATGACCATCAATTTGGATCTCAAAAGGGGC
GGTAATGGCAGGTTCTTGAAGACTGCTGCCTATGGACACTTTGGCAGGGA
TGACCCAGACTTCACTTGGGAAGTTGTGAAGCCCCTCAAGTGGGAAAAGC
CTCAAGCTTAAATTTGAGTTGAAAAGTGAAAACTATCCCTGCTGTTCAAG
TTTGCTTCTATTGGTAGTGGATGAATAATTTGAATATTATCTTGCTGCTG
CTTTGTAATACTAAGCAAATCTCCTGTGTTCAGAACTCATACATGTTCCC
CATTCAATTCCTTTCTTTTTCTTCTTTCCCCACTTCTTTTTTGGTTTTGG
TTTAATGTACCATGTCACCACTGTTGTGTAGTGATATCGATTGAGAATTT
TGCTCAACTGGTGCCTGGAATTAGTAAAATTCTTCCTTTTGCTTACGACT
ATTTTTGGAATGTAGAATGAANGCAGCAGCGAGTTGTATTAATTTG
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