DC900119

Overview
NameDC900119
Unique NameDC900119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK2_MACFA (S-adenosylmethionine synthetase isoform type-2 OS=Macaca fascicularis GN=MAT2A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query:    5 TNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 343
            T VDRS AY  R  AKS+V  GL RR +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  288 TKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK2_HUMAN (S-adenosylmethionine synthetase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query:    5 TNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 343
            T VDRS AY  R  AKS+V  GL RR +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK++FD RPG++  +LDLK+     + +TAAYGHFGRD   F WEV K LK+
Sbjct:  288 TKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIYQRTAAYGHFGRD--SFPWEVPKKLKY 395          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_THENN (S-adenosylmethionine synthetase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 54/107 (50.47%), Postives = 80/107 (74.77%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            PT VDRS  Y+ R  AK++VA GLA + ++Q+SYAIGV +P+S+ +D++GT K+ ++++LK++ E FDFRPG +   L+L R     + KTAAYGHFGR++ +FTWE
Sbjct:  278 PTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSILIDTFGTAKVDEEKLLKVITEIFDFRPGAIIKKLNLLR---PIYRKTAAYGHFGRNEEEFTWE 381          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURVG (S-adenosylmethionine synthetase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURS3 (S-adenosylmethionine synthetase OS=Burkholderia sp. (strain 383) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURCM (S-adenosylmethionine synthetase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURCJ (S-adenosylmethionine synthetase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURCH (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain HI2424) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURCC (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain MC0-3) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
BLAST of DC900119 vs. ExPASy Swiss-Prot
Match: METK_BURCA (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain AU 1054) GN=metK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 PTNVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 322
            P+ VDRS AY  R  AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  271 PSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374          
The following BLAST results are available for this feature:
BLAST of DC900119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_MACFA4.103e-2654.87S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_HUMAN4.103e-2654.87S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_THENN5.359e-2650.47S-adenosylmethionine synthetase OS=Thermotoga neap... [more]
METK_BURVG5.359e-2656.07S-adenosylmethionine synthetase OS=Burkholderia vi... [more]
METK_BURS35.359e-2656.07S-adenosylmethionine synthetase OS=Burkholderia sp... [more]
METK_BURCM5.359e-2656.07S-adenosylmethionine synthetase OS=Burkholderia am... [more]
METK_BURCJ5.359e-2656.07S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCH5.359e-2656.07S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCC5.359e-2656.07S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCA5.359e-2656.07S-adenosylmethionine synthetase OS=Burkholderia ce... [more]

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Properties
Property NameValue
Genbank descriptionDC900119 VSS Citrus sinensis cDNA clone VS27V34 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900119 ID=DC900119; Name=DC900119; organism=Citrus sinensis; type=EST; length=696bp
CCCTACTAACGTGGATAGGAGTGGTGCATACATTGTTAGGCAGGCTGCTA
AGAGCATTGTTGCAAACGGGCTTGCTCGCAGGTGCATTGTCCAAGTCTCC
TATGCCATTGGTGTGCCTGAGCCATTGTCTGTTTTTGTGGACTCATATGG
AACCGGCAAGATTCCTGACAAGGAGATCCTCAAAATTGTGAAGGAAAGCT
TTGATTTCAGGCCAGGAATGATGACCATCAATTTGGATCTCAAAAGGGGC
GGTAATGGCAGGTTCTTGAAGACTGCTGCCTATGGACACTTTGGCAGGGA
TGACCCAGACTTCACTTGGGAAGTTGTGAAGCCCCTCAAGTGGGAAAAGC
CTCAAGCTTAAATTTGAGTTGAAAAGTGAAAACTATCCCTGCTGTTCAAG
TTTGCTTCTATTGGTAGTGGATGAATAATTTGAATATTATCTTGCTGCTG
CTTTGTAATACTAAGCAAATCTCCTGTGTTCAGAACTCATACATGTTCCC
CATTCAATTCCTTTCTTTTTCTTCTTTCCCCACTTCTTTTTTGGTTTTGG
TTTAATGTACCATGTCACCACTGTTGTGTAGTGATATCGATTGAGAATTT
TGCTCAACTGGTGCCTGGAATTAGTAAAATTCTTCCTTTTGCTTACGACT
ATTTTTGGAATGTAGAATGAANGCAGCAGCGAGTTGTATTAATTTG
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