DC900117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.282e-14 Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 323 R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG + D++P GGF +YG V+ Y L+KG GP KR+V R ++ Sbjct: 234 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 77.7962 bits (190), Expect = 5.282e-14 Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R++ +G W+P+RV TV + GQ GYH RTE+NK++ + + TP GGFP+YG V+ Y L+KG GP++R+V R ++ S E+ +++ T+S G Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.282e-14 Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R++ +G W+P+RV TV + GQ GYH RTE+NK++ + + TP GGFP+YG V+ Y L+KG GP++R+V R ++ S E+ +++ T+S G Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.010e-14 Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 3 Query: 6 LPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 314 LPR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G+ E ITP GFPHYGV+ Y+LI+G G +KR+V LR Sbjct: 224 LPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13 Identity = 45/105 (42.86%), Postives = 57/105 (54.29%), Query Frame = 3 Query: 6 LPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 314 LPR K +G R+ IG PA + FT R GQ G+H RTE NK+I K+G E ITP GFPHYGV+ Y+L++G G +KR+V LR Sbjct: 224 LPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13 Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---LKFIDTSSKFG 395 R + +G W P V + V GQ G+ RTE NK+I K+G+ + E I P GGF HYG+V +Y+LIKG GP KR+V +R + +R+ ++I+ ++++ SK G Sbjct: 229 RHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13 Identity = 47/105 (44.76%), Postives = 56/105 (53.33%), Query Frame = 3 Query: 6 LPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 314 LPR K +G R+ IG PA V FT R GQ G+H RTE NK+I K+G E ITP GF HYGVV Y+LI+G G +KR+V LR Sbjct: 228 LPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLR 317
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.627e-13 Identity = 45/105 (42.86%), Postives = 56/105 (53.33%), Query Frame = 3 Query: 6 LPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 314 LPR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G E ITP GF HYGV+ Y+LI+G G KKR+V LR Sbjct: 224 LPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12 Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 323 R++ +G W+P+RV TV + GQ GYH RTE+NK++ +G+ + T GGF +YG V+ Y L+KG GP KR+V R ++ Sbjct: 235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP---------------TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 316
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.433e-12 Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R++ +G W+P+RV TV + GQ GYH RTE+NK++ ++G + T GGF YG V+ Y LIKG GP +R++ R ++ + S + +++++ T+S G Sbjct: 235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNGDEP---------------TVDGGFVGYGEVDGPYALIKGSLPGPDQRLLRFRTAV--RPSDQPRLDPEVRYVSTASNQG 338 The following BLAST results are available for this feature:
BLAST of DC900117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900117 ID=DC900117; Name=DC900117; organism=Citrus sinensis; type=EST; length=641bpback to top |