DC900117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17 Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKD-ITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R V IG W P R +TVA GQ GYH RTE NKK+ K+G D +E D I P GGF YG V +Y+L+KG GP KR+V LR+ + + ++ EI +I T+SK G Sbjct: 230 RHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPEI--SYISTTSKQG 336
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17 Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 3 Query: 30 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 LR++ +G+++P+RVS+ V + GQ GYH RTE NK+I K+G +E +TP GGF +YG+V DY+LIKG GP KR++ LR + + + L E + +I SK G Sbjct: 232 LRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.908e-17 Identity = 51/122 (41.80%), Postives = 63/122 (51.64%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 398 R IG W P RV +TV GQ G+H RTE NK+I KLG E ITP GGF +YG V Y+++KG GP KR+V LR S+ + L EI +I T SK G+ Sbjct: 229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEI--AYISTESKQGN 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17 Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 398 R IG W P RV +TV GQ G+H RTE NK+I KLG E ITP GGF +YG V Y+++KG GP KR+V LR S+ + L E+ +I T SK G+ Sbjct: 229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17 Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 398 R IG W P RV +TV GQ G+H RTE NK+I KLG E ITP GGF +YG V Y+++KG GP KR+V LR S+ + L E+ +I T SK G+ Sbjct: 229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17 Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 398 R IG W P RV +TV GQ G+H RTE NK+I KLG E ITP GGF +YG V Y+++KG GP KR+V LR S+ + L E+ +I T SK G+ Sbjct: 229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.104e-17 Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 395 R+V +G W+P V +TV +AGQ G+H RTE NK++ K+G+ +E ITP GGF HYGV+ Y+L+ G GP KR++ +R ++ + + + + + ++ T+SK G Sbjct: 226 RRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17 Identity = 49/122 (40.16%), Postives = 64/122 (52.46%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 398 R+ IG W P RV +TV AGQ G+H RTE NK+I KLG E ITP GGF +YG V Y+++KG GP KR+V LR ++ + L E+ +I SK G+ Sbjct: 229 RQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17 Identity = 49/122 (40.16%), Postives = 64/122 (52.46%), Query Frame = 3 Query: 33 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 398 R+ IG W P RV +TV AGQ G+H RTE NK+I KLG E ITP GGF +YG V Y+++KG GP KR+V LR ++ + L E+ +I SK G+ Sbjct: 229 RQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334
BLAST of DC900117 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15 Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 30 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 359 LR+V +G W PA VS+ V +AGQ GYH RT+ NK+I K+ E + P GGF +YG+V +Y+LIKG GP KR++ LR+ + S + +I Sbjct: 232 LRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327 The following BLAST results are available for this feature:
BLAST of DC900117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900117 ID=DC900117; Name=DC900117; organism=Citrus sinensis; type=EST; length=641bpback to top |