CN185974

Overview
NameCN185974
Unique NameCN185974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E_DROME (Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.252e-22
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = -2
Query:  197 LLATIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKEL--LDYSDTIGFIFHED--AKHDNRSKNRYT 430
            LL  IGE FDH D+ICGAV+N+R +  KIS+WT + +NE A + IG + ++   L  ++++ +  H+D   K  +  K+ YT
Sbjct:  177 LLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYT 258          

HSP 2 Score: 59.3066 bits (142), Expect = 2.252e-22
Identity = 25/60 (41.67%), Postives = 34/60 (56.67%), Query Frame = -3
Query:  538 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWL 708
            +FWSLYN+I  PS++ +G+D+  FK  I P WED     GG+W +   K      D  WL
Sbjct:  115 DFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWL 174          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E_DICDI (Eukaryotic translation initiation factor 4E OS=Dictyostelium discoideum GN=eif4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.093e-21
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = -2
Query:  200 LLATIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHED-AKHDNRSKNRY 430
            ++A +GE FD  DEICG V N R   +KIS+WTK A +E A   +G   K++L+   TI +  HED  +    SKN Y
Sbjct:  171 VMACVGETFDSSDEICGIVYNSRKNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLY 248          

HSP 2 Score: 57.3806 bits (137), Expect = 1.093e-21
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = -3
Query:  529 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTV 708
            +FW ++NN+ + S L  G+ ++ FK+ IEPKWE      GGKW V +  K + D  WL +V
Sbjct:  111 DFWCVFNNLPNVSNLKQGSSYHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSV 171          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: I4E1B_HUMAN (Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 3.343e-20
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = -2
Query:  200 LLATIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS--DTIGFIFHED--AKHDNRSKNRY 430
            LL  IGE F+ H  E+CGAVVN+R + +KI++WT+ A N+A  + +G+ +KE L  S    IG+  H D   K ++ +KN++
Sbjct:  159 LLCLIGESFEEHSREVCGAVVNIRTKGDKIAVWTREAENQAGVLHVGRVYKERLGLSPKTIIGYQAHADTATKSNSLAKNKF 240          

HSP 2 Score: 54.299 bits (129), Expect = 3.343e-20
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = -3
Query:  523 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL 708
            +FW+LY++I   SKL+ G D+  FK+ I+P WED     GG+W V   K +     D  WL T +CL
Sbjct:   96 DFWALYSHIQLASKLSSGCDYALFKDGIQPMWEDSRNKRGGRWLVSLAKQQRHIELDRLWLETLLCL 162          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E3_CAEEL (Eukaryotic translation initiation factor 4E-3 OS=Caenorhabditis elegans GN=ife-3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.345e-20
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -2
Query:  230 LLATIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDA 430
            L+A +GEQFD +GD ICGAVVNVR + +K+SLWT++A+ +   + IG+  K+ L   DT  + +  H+D+
Sbjct:  129 LMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDS 198          

HSP 2 Score: 55.0694 bits (131), Expect = 4.345e-20
Identity = 26/61 (42.62%), Postives = 34/61 (55.74%), Query Frame = -3
Query:  538 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWL 708
            +FWSLYN+I     L  G+D+Y FK  I+P WED     GG+W V+  K +     D  WL
Sbjct:   66 DFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWL 126          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4EB_DANRE (Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.114e-19
Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = -3
Query:  523 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTS----WLYT-VCL 708
            +FW LYNNI  PSKL+ G D+  FK+ IEP WED     GG+W +   K    T     WL T +CL
Sbjct:   68 DFWGLYNNIQLPSKLSSGCDYSMFKDGIEPMWEDRSNKCGGRWLITLAKQHRHTELDHFWLETLLCL 134          

HSP 2 Score: 56.6102 bits (135), Expect = 2.114e-19
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  200 LLATIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 430
            LL  IGE F     +ICG+V+N+RA+ +KI+LWT NA N      IG+++KE L       IG+  H D   K ++ +KN++
Sbjct:  131 LLCLIGEGFSSFSRDICGSVINIRAKGDKIALWTSNAENCETVTYIGRKYKESLGLPQKLVIGYQAHADTATKSNSITKNKF 212          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E_APLCA (Eukaryotic translation initiation factor 4E OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.944e-18
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = -2
Query:  197 LLATIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRYT 430
            LL  IGE FD H +EICGA VN+R + +K+ LWT++A    A   IG + KE L       IGF  H D   K  +  KNR+T
Sbjct:  132 LLCLIGEGFDEHSEEICGATVNIRNKGDKLGLWTRDAQKTEATKKIGIKLKESLSVPPKIVIGFQAHSDTAGKAGSTVKNRFT 214          

HSP 2 Score: 50.8322 bits (120), Expect = 4.944e-18
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = -3
Query:  523 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTS----WLYT-VCL 708
            +FW LYN+    SKL  G D+  FK  I+P WED     GG+W +   K +  T     WL T +CL
Sbjct:   69 DFWGLYNHTLPASKLQSGCDYSVFKAGIQPMWEDAQNKKGGRWLINLNKTQRQTHLDDFWLETLLCL 135          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 8.833e-17
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = -3
Query:  541 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 708
            +FW  Y+++  P  L   +DF+ FK  I+P WED    NGGKW +   KG +   W
Sbjct:   93 QFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCW 148          

HSP 2 Score: 52.7582 bits (125), Expect = 8.833e-17
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = -2
Query:  269 LLATIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 430
            +LA +GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L+
Sbjct:  152 ILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 205          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.148e-16
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = -3
Query:  541 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 708
            +FW  Y+++  P  L   +DF+ FK  I+P WED    NGGKW +   KG +   W
Sbjct:   93 QFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCW 148          

HSP 2 Score: 52.7582 bits (125), Expect = 1.148e-16
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = -2
Query:  269 LLATIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 430
            +LA +GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L+
Sbjct:  152 ILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 205          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.536e-16
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = -3
Query:  541 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 708
            +FWS+  +   P+++   AD + FK  ++P WEDP    GGKW +   KG S   W
Sbjct:   69 QFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIW 124          

HSP 2 Score: 53.1434 bits (126), Expect = 2.536e-16
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = -2
Query:  194 LLATIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD--YSDTIGFIFHEDAKHDNRSKNRYTT 430
            L+A IGEQF  GDE+CGAV ++R +++ ISLW +NA +      I +  + +L    +  + +  H+D   D +S  R+TT
Sbjct:  128 LMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRD-QSSYRHTT 207          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E1_SCHPO (Eukaryotic translation initiation factor 4E-1 OS=Schizosaccharomyces pombe GN=tif451 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 9.399e-16
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  203 LLATIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHEDAKH--DNRSKNR 430
            +LA IGE  D  G E+ G V+N+R    ++++WTK+ +N    M IG ++K++L+   S+TI F  HED+      R+K R
Sbjct:  135 VLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGSTRAKTR 215          

HSP 2 Score: 50.447 bits (119), Expect = 9.399e-16
Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = -3
Query:  529 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTV 708
            EFW ++NNI+  S L + +D+  F+  + P+WED     GGKW     KG+     D  WL TV
Sbjct:   73 EFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKW-AFQNKGRGGNALDEMWLTTV 135          
The following BLAST results are available for this feature:
BLAST of CN185974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
IF4E_DROME2.252e-2240.24Eukaryotic translation initiation factor 4E OS=Dro... [more]
IF4E_DICDI1.093e-2143.59Eukaryotic translation initiation factor 4E OS=Dic... [more]
I4E1B_HUMAN3.343e-2041.46Eukaryotic translation initiation factor 4E type 1... [more]
IF4E3_CAEEL4.345e-2045.71Eukaryotic translation initiation factor 4E-3 OS=C... [more]
IF4EB_DANRE2.114e-1946.27Eukaryotic translation initiation factor 4E-1B OS=... [more]
IF4E_APLCA4.944e-1844.58Eukaryotic translation initiation factor 4E OS=Apl... [more]
IF4E2_MOUSE8.833e-1739.29Eukaryotic translation initiation factor 4E type 2... [more]
IF4E2_HUMAN1.148e-1639.29Eukaryotic translation initiation factor 4E type 2... [more]
IF4E4_CAEEL2.536e-1637.50Eukaryotic translation initiation factor 4E-4 OS=C... [more]
IF4E1_SCHPO9.399e-1638.27Eukaryotic translation initiation factor 4E-1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185974 ID=CN185974; Name=CN185974; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTAACAACTTCAATATATTGCAAAGGTAAAATCAGCTAGTGCTTC
CCATTGGCGTTTAAGAGGGTATTAGTACAGAAAACAGGAAATCGTAAAAG
GTTTCAGAGCTCTATAACAACTAACAAGCCTACTGTCATCCAGAAAATAC
AATGCATTTCCTGGGACTACACTGCAAAACTCTGTACAGTTTATGTTGTG
TAGCGATTCTTTGACCTGTTGTCATGCTTTGCATCCTCATGAAAGATGAA
CCCTATGGTGTCACTATAATCAAGCAACTCCTTCCATTGTTTCCCAATGC
TCATCTGAGCAGCTTCATTTGAAGCATTCTTGGTCCACAGAGATATCTTT
TCCTGCCTAGCTCTAACATTTACAACTGCTCCACAGATTTCATCTCCATG
ATCAAACTGTTCTCCAATGGTTGCCAGCAACTACCAAGTACATGTACAAA
TTTAAACCCATACTTGGCATTTAATATTAGGCTGATAAACCAACATAAAC
AAACAAACCCACTCATTGAGTCAAGACATACCGTATACAGCCAAGAAGTA
TCAGATTTTCCTTTAGGAAAGATGACAGTCCACTTCCCGCCATTAGCACA
AACTGGGTCCTCCCATTTTGGCTCAATCTTATTCTTGAAACAATAAAAGT
CTGCTCCCACAGCCAACTTGCTCGGATGATGTATATTGTTGTAAAGGCTC
CAGAACTCTT
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