CN185974

Overview
NameCN185974
Unique NameCN185974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185974_ssr497 microsatellite CN185974_ssr497:497..508. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2513 contig Csv1_Contig2513:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.180e-14
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = -2
Query:  212 LLATIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKE--LLDYSDTIGFIFHEDAKHDNRS 430
            LLA +G+Q D  D ICGAV++VR  ++ IS+W +NAS+  A M +    K    L ++  + +  H+ +  DN S
Sbjct:  139 LLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKPHDASLRDNSS 213          

HSP 2 Score: 47.7506 bits (112), Expect = 2.180e-14
Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = -3
Query:  541 FWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 705
            FW+ Y ++   S L    D + FK+ I P WED    NGGKW + F K  S   W
Sbjct:   81 FWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSARFW 135          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E2_SCHPO (Eukaryotic translation initiation factor 4E-2 OS=Schizosaccharomyces pombe GN=tif452 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.765e-14
Identity = 26/62 (41.94%), Postives = 32/62 (51.61%), Query Frame = -3
Query:  529 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKS-DTSWLYTV 708
            EFW ++  I   S L   +D+  F   I P+WEDP   NGGKW      KG + D  WLY V
Sbjct:   99 EFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKWAYQSKHKGSNLDELWLYMV 160          

HSP 2 Score: 48.9062 bits (115), Expect = 4.765e-14
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = -2
Query:  230 LLATIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDA 430
            +LA IGE  D  G E+ G V N+R    +I++WT+N +++     IG ++KE+L  SD  TI +  HED+
Sbjct:  160 VLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAHEDS 229          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E_CANGA (Eukaryotic translation initiation factor 4E OS=Candida glabrata GN=TIF45 PE=3 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 4.793e-14
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = -3
Query:  529 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT--VIFPKGKSDTSWLYTV 708
            EFW++  NI  P +L + +D++ F+N I P+WED   A GGKW+  V     + D  WL T+
Sbjct:   69 EFWAIVQNIPEPHELPLKSDYHVFRNDIRPEWEDSANAKGGKWSFQVRGRGAEIDELWLRTL 130          

HSP 2 Score: 44.2838 bits (103), Expect = 4.793e-14
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = -2
Query:  197 LLATIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS--DTIGFIFHEDAKHDNRSKNRYT 430
            LLA IGE  D  D +I G V+NVR    + +LWTK+   E    +IG ++K++L  +  DT+ F  H  A +D  S+   T
Sbjct:  130 LLAVIGETIDEEDSQINGVVLNVRKGGNRFALWTKSCDKEPLS-NIGARFKQVLKLADEDTLEFFPHSTA-NDRHSQPTIT 208          
BLAST of CN185974 vs. ExPASy Swiss-Prot
Match: IF4E_YEAST (Eukaryotic translation initiation factor 4E OS=Saccharomyces cerevisiae GN=TIF45 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.887e-13
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = -3
Query:  529 EFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTV 708
            EFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+    +GK    D  WL T+
Sbjct:   73 EFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTL 134          

HSP 2 Score: 40.4318 bits (93), Expect = 3.887e-13
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = -2
Query:  260 LLATIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 430
            LLA IGE  D  D +I G V+++R    K +LWTK+   E   + IG ++K++L  +D
Sbjct:  134 LLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEPL-LRIGGKFKQVLKLTD 190          
The following BLAST results are available for this feature:
BLAST of CN185974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
IF4E3_ARATH2.180e-1437.33Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_SCHPO4.765e-1441.94Eukaryotic translation initiation factor 4E-2 OS=S... [more]
IF4E_CANGA4.793e-1440.32Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E_YEAST3.887e-1339.68Eukaryotic translation initiation factor 4E OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185974 ID=CN185974; Name=CN185974; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTAACAACTTCAATATATTGCAAAGGTAAAATCAGCTAGTGCTTC
CCATTGGCGTTTAAGAGGGTATTAGTACAGAAAACAGGAAATCGTAAAAG
GTTTCAGAGCTCTATAACAACTAACAAGCCTACTGTCATCCAGAAAATAC
AATGCATTTCCTGGGACTACACTGCAAAACTCTGTACAGTTTATGTTGTG
TAGCGATTCTTTGACCTGTTGTCATGCTTTGCATCCTCATGAAAGATGAA
CCCTATGGTGTCACTATAATCAAGCAACTCCTTCCATTGTTTCCCAATGC
TCATCTGAGCAGCTTCATTTGAAGCATTCTTGGTCCACAGAGATATCTTT
TCCTGCCTAGCTCTAACATTTACAACTGCTCCACAGATTTCATCTCCATG
ATCAAACTGTTCTCCAATGGTTGCCAGCAACTACCAAGTACATGTACAAA
TTTAAACCCATACTTGGCATTTAATATTAGGCTGATAAACCAACATAAAC
AAACAAACCCACTCATTGAGTCAAGACATACCGTATACAGCCAAGAAGTA
TCAGATTTTCCTTTAGGAAAGATGACAGTCCACTTCCCGCCATTAGCACA
AACTGGGTCCTCCCATTTTGGCTCAATCTTATTCTTGAAACAATAAAAGT
CTGCTCCCACAGCCAACTTGCTCGGATGATGTATATTGTTGTAAAGGCTC
CAGAACTCTT
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