DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.539e-30
Identity = 80/228 (35.09%), Postives = 126/228 (55.26%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            +A +AEF++T +F++    + I + K ++  A    GL+  + A    +FV V   A ISGGH+NPAV FG F+   ++L+R + Y++AQ LG+I    L+         + G     ++ G   G AL  EI+ TF LVYTV++ A DPK+     ++ ++AP+ IGF V    L     TG  +NPA SFG AV+     +W +HW++W GP +G   A   ++ +
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.622e-30
Identity = 83/231 (35.93%), Postives = 124/231 (53.68%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVG-LLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGAN----TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            RA ++EFVAT +F++ +  +V G  K     G +G LL +A A    +   V  +   SGGH+NPAVTFG+ + R++S  RA  Y  AQ LGA+  V L++           GG      T+    ++  AL  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+FG A++  N   W  HW++W+GP +GA  A A +++++
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRL--------ASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWN---WRHHWVYWLGPLIGAGMAGALYEFVM 244          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.622e-30
Identity = 80/237 (33.76%), Postives = 122/237 (51.48%), Query Frame = 3
Query:  180 KLWSFYRALIAEFVATLLFLYVSV-ATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVAS---GYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILR 878
            K+W   R L+ E V T   ++V V +T  G   Q           IA+ FG  +  +      +SG HINPAVT G  +  ++S+++A  Y++ QC+GAI G  ++K  +    + + GG   V+S     N   A+  E + TF+LV+ V + +DP R      +   APL +G A+   HL  I ++G  +NPARSFG AV+      W  HW++WVGP  G L A   ++ I +
Sbjct:   21 KIW---RMLLGELVGTFFLIFVGVGSTTSGSVPQ-----------IAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVAL----DGVAGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGR----QDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQG---VWTYHWVYWVGPIAGGLLAGIIYRLIFK 232          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.883e-30
Identity = 87/249 (34.94%), Postives = 128/249 (51.41%), Query Frame = 3
Query:  132 DYVDPXPAPLIDMAELKLW-SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            D V+P       M   +LW +  RAL AEF+AT L+++  V +V+       +     +L IA  F  +  + V  T   SG H NPAVT    +   +SL RAVAY+ AQ +GA  G  L+   M  +      G N V +  + G A+  E++ T  LV  VF++TD ++++            IG +V + HL  I  TG  +NPARSFG A+I      +  HW+FWVGP +GAL A+  + ++L
Sbjct:    2 DAVEPGGRGWASMLACRLWKAISRALFAEFLATGLYVFFGVGSVMRWPTALPS-----VLQIAITFNLVTAMAVQVTWKASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRET-LGINVVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGS------PATMIGISVALGHLIGIHFTGCSMNPARSFGPAIIIGK---FTVHWVFWVGPLMGALLASLIYNFVL 235          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.996e-29
Identity = 87/225 (38.67%), Postives = 125/225 (55.56%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVI--GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 860
            +A +AEF+ATLLF++  V + I  G      A    GL+ IA A    +FV V   A  SGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L++ F+ H         + V+ G  +   +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   +   +  +W++WVGP + G LA   Y
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLR-FVTH---GKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAAD---FAGNWVYWVGPLIGGGLAGLVY 232          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.912e-29
Identity = 84/231 (36.36%), Postives = 127/231 (54.98%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGG---VGLLGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            +ALI EF+ T LF++  V + +     +D+  G   VGL  +A A   ++ V++  +AG ISGGH+NPAVT GL L   +S+ RA  Y + Q L +     L    + +    +G   +T+ASG +    +  EII TF L++TV++   DPK+ + D   P+L     GF V    LA    +G  +NPARSFG A++  N   W DHW++WVGP +G   A   ++ +L
Sbjct:   19 KALIVEFITTFLFVFAGVGSAMA----TDSLVGNTLVGLFAVAVAHAFVVAVMI--SAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFL----LSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.110e-29
Identity = 81/230 (35.22%), Postives = 125/230 (54.35%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAYHQYIL 875
            +A +AEF++TL+F+     + +   K  ++ A    GL+  A A    +FV V   A ISGGH+NPAVTFG F+   ++L+R + Y +AQ LG++    +    +K     L   A  +++G    +A   EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +G  +NPA +FG AV+      W +HW++W GP V G +A   Y  + +
Sbjct:   21 KAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSV----VACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLVGGGIAGLIYEVFFI 239          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.942e-28
Identity = 81/230 (35.22%), Postives = 123/230 (53.48%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV--ASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            +A +AEF++TL+F++    + +   K +   A    GL+  A A    +FV V   A ISGGH+NPAVTFG F+   ++L R + Y +AQ LG+     L++        S GG A      +G +   AL  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L      G  +NPA SFG A++     +W+  W++WVGP +G   A   ++ +
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRF-------STGGLATGTFGLTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWSWESQWVYWVGPLIGGGLAGVIYEVL 236          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.644e-27
Identity = 78/226 (34.51%), Postives = 118/226 (52.21%), Query Frame = 3
Query:  195 YRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGL--VKAFMKHEYNSLGGGANTVA----SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAA 851
            +R L  EF+ T   +     + +      +   G+GLLG+++AFG  +  + Y   GISGGH NPAV+ GL +A ++     V Y++AQ  GAI    +  V A  K ++   G  AN        GY+  +AL  E++ T   +  +  +T        S VPV  AP+ IG  + ++HL +IP+T T +NPARS G A ++  D A    W+FWV P +GA+ A
Sbjct:    2 FRKLSVEFLGTFWLVLGGCGSAVLAAAFPEV--GIGLLGVSFAFGLTVLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLIILGST-------HSRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQA-LFVGDWAISQLWLFWVAPLIGAVIA 217          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.147e-27
Identity = 83/232 (35.78%), Postives = 121/232 (52.16%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGG----VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV--ASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            +A  AEF++TL+F++    + +   K +   GG     GL+  A A    +FV V   A ISGGH+NPAVTFG F+   ++L R + Y VAQ LG+     L++        S GG A      +G +   AL  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L      G  +NPA SFG A++      W   W++WVGP +G   A   ++ +
Sbjct:   21 KAAFAEFISTLIFVFAGQGSGMAFSKLTG--GGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRF-------STGGQATGTFGLTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWEWGYQWVYWVGPLIGGGLAGVIYELL 236          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
TIP1_MEDSA3.539e-3035.09Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP32_ORYSJ4.622e-3035.93Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
AQP_DROME4.622e-3033.76Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
AQP6_HUMAN7.883e-3034.94Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
TIP22_MAIZE2.996e-2938.67Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP41_ARATH3.912e-2936.36Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP11_ARATH5.110e-2935.22Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_ORYSJ1.942e-2835.22Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
AQPZ1_RHIME1.644e-2734.51Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
TIP11_MAIZE2.147e-2735.78Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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