DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900113_ssr45 microsatellite DC900113_ssr45:45..71. BLAST: Citrus ESTs to Prunus persica proteins V1
DC900113_ssr67 microsatellite DC900113_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:28..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 6.246e-27
Identity = 80/236 (33.90%), Postives = 117/236 (49.58%), Query Frame = 3
Query:  183 LWSFYRALIAEFVATLLFLYVS--VATVIGHK----KQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            L + + A + EF  T +FL+ +  +  V  H        D      L+ IA  FG  +   ++C AG+SGG +NPAV+  L LAR VS  R V   V+Q +  +   G   A    E       AN++  G ++   L  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARS GAAV       +  HWI+W+GP +G++ A +  Q +
Sbjct:   45 LRNHFIAAVGEFCGTFMFLWCAYVICNVANHDVALVAAPDGSHPGQLIMIAIGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAVSPTRCVVMWVSQIVAGMAAGGAASAMTPGEVLF----ANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGSILAWSVWQLL 269          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.158e-27
Identity = 70/234 (29.91%), Postives = 119/234 (50.85%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE---------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            R L AE + T + ++    +V+      +   G+G +G++ AFG  +  ++Y    ISGGH NPAVT GL+   +   +  + Y+++Q +G I    ++      +         + S G G ++   G++  SA+ AEI+ T + +  +  ATD +        P  APL IG A+ +++L +IPIT T +NPARS  A  I+ N  A +  W FWV P +G +     ++ +
Sbjct:    3 RKLAAELLGTFVLVFGGCGSVVFAAAFPEL--GIGFVGVSLAFGLTVLTMIYAVGHISGGHFNPAVTIGLWAGGRFRAVEVIPYIISQVIGGILAAAVLYVIASGQVGFDATTSGFASNGFGEHS-PGGFSLQSAIVAEIVLTAIFLIVIIGATDRRAP------PGFAPLAIGLALVLINLISIPITNTSVNPARS-TAVAIFQNTWALEQLWFFWVMPIIGGIVGGGIYRLL 226          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.065e-26
Identity = 73/225 (32.44%), Postives = 114/225 (50.67%), Query Frame = 3
Query:  195 YRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV------KAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAA 851
            ++ L AEF+ T   +     + +          G+GLLG+++AFG  +  + Y   GISGGH NPAV+ GL +A +V     V+Y++AQ  GAI    ++      KA  +    +  G       GY+  +AL  E++ TF  +  +  +T  +  A        AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    W+FW+ P  GA  A
Sbjct:    2 FKKLCAEFLGTCWLVLGGCGSAVLASAFPQV--GIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG------FAPIAIGLALTLIHLVSIPVTNTSVNPARSTGQA-LFVGGWALSQLWLFWIAPLFGAAIA 217          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.817e-26
Identity = 81/227 (35.68%), Postives = 119/227 (52.42%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGG--VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGA--EIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGA-LAAAAY 860
            RA++AE + T LF++  V + +   K +   G   VGL  +A A   ++ V+V     +SGGHINPAVT GL    +++L R+  Y+ AQ LG+     L+ AF+         G    A G   G+  G   E + TF L++ V+ +  DP+R+     V  + PL +G  V    LA  P +G  +NPARSFG A++      W DHW++WVGP +G  LA   Y
Sbjct:   19 RAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLAC-LLLAFLA----VADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-----VGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAG---VWADHWVYWVGPLIGGPLAGLVY 232          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.817e-26
Identity = 69/193 (35.75%), Postives = 98/193 (50.78%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI    ++      +     GG            GY+  + L  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++ +  A    W+FWV P VGA+  A
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA-LFADRAALSQLWLFWVAPLVGAVIGA 218          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.817e-26
Identity = 69/193 (35.75%), Postives = 98/193 (50.78%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI    ++      +     GG            GY+  + L  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++ +  A    W+FWV P VGA+  A
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA-LFADRAALSQLWLFWVAPLVGAVIGA 218          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.374e-26
Identity = 73/203 (35.96%), Postives = 102/203 (50.25%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVAS---------GYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA-AYHQYI 872
            G+G LG+A AFG  +F   Y    ISGGH NPAV+FGL++ ++    +   Y+ AQ LGAI     +    +   N    G+N +A+         GY   +AL  E + TF+ +  +   TD    A        AP  IG A+ ++HL +IPIT T +NPARS G A+   N       W+FW+ P  GAL A   YH  +
Sbjct:   40 GLGYLGVALAFGLTVFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFSLDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIGQLWLFWLAPIAGALLAGFVYHNVL 236          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.374e-26
Identity = 69/193 (35.75%), Postives = 98/193 (50.78%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI    ++      +     GG            GY+  + L  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++ +  A    W+FWV P VGA+  A
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGA 218          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.374e-26
Identity = 78/226 (34.51%), Postives = 114/226 (50.44%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG--ANTVA----SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            R  I+EF+ T   ++    + +      +   G+G LG+A+AFG  +  + Y   GISGGH NPAV+ GL +A K      V Y+VAQ LGA+     +   +  +  +  GG  AN        GY+  SAL  EII T   +  +  +T          VPV  AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    W+FW+ P +G    A
Sbjct:    3 RKFISEFLGTFWLVFGGCGSAVFAAAFPEL--GIGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLVVILGST-------HGRVPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPILGGAIGA 218          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.100e-26
Identity = 77/243 (31.69%), Postives = 116/243 (47.74%), Query Frame = 3
Query:  171 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVG------LLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA 881
            AE++   F+R++I+E +A+ +++++      G         GVG      LL  A A G  +  L  C   ISG HINPAVT  L + R +S IRA  Y+ AQC G I G  L+       Y      A + ++        G E I TF++V   F +TDP +    +     +   IG A       ++P     +NPARS G + + N    WD HW++W GP VG +A+   ++YI  +
Sbjct:   57 AEIRTLEFWRSIISECLASFMYVFIVCGAAAGV--------GVGASVSSVLLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLNK---WDSHWVYWFGPLVGGMASGLVYEYIFNS 279          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AQY1_YEAST6.246e-2733.90Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
AQPZ_PHOLL8.158e-2729.91Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]
AQPZ2_RHIME1.065e-2632.44Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
TIP44_MAIZE1.817e-2635.68Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
AQPZ_BRUAB1.817e-2635.75Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA21.817e-2635.75Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQPZ_SYNY32.374e-2635.96Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQPZ_BRUME2.374e-2635.75Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ1_AGRT52.374e-2634.51Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
BIB_DROME3.100e-2631.69Neurogenic protein big brain OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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