DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900113_ssr45 microsatellite DC900113_ssr45:45..71. BLAST: Citrus ESTs to Prunus persica proteins V1
DC900113_ssr67 microsatellite DC900113_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:28..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_RHOPA (Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.442e-24
Identity = 66/206 (32.04%), Postives = 101/206 (49.03%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAI-------------CGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            G+GL+G++ AFG  +  + Y    ISG H+NPAVT GL    +  + +   Y++AQ LGAI              G  L K F  + Y +   G       YN  +    E++ T + ++ +  +T  K  A        APL IG A+ M+HL +IP+T T +NPARS G A ++    A    W+FWV P +G +     ++ +
Sbjct:   34 GIGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTLGLAAGGRFPVKQIAPYIIAQVLGAIAAAALLYLIASGAAGFDLAKGFASNGYGAHSPGQ------YNLVACFVMEVVMTMMFLFVIMGSTHGKAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAIGQLWLFWVAPLLGGVLGGVIYRVL 226          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.456e-23
Identity = 76/237 (32.07%), Postives = 114/237 (48.10%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVI--GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAA 887
            F+R ++ E V T LF+++ V   +  G   +    GG  L  +A   G  + V V  TAG  ISGGH+NPAVT  L +   V+L R+  Y+ AQ L +     L++         L    + +A G      + AE + TF L++ +++   DP++      +P   PL  G  V    +A   ++G  +NPARSFG AV       W  HW++WVGP  G   A   ++    AAA
Sbjct:   17 FFRGVLGELVLTFLFVFIGVGAAMTDGATTKGSTAGG-DLTAVA--LGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLT----GGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL-----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVA---SGVWTHHWVYWVGPLAGGPLAVLVYECCFMAAA 238          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.472e-23
Identity = 65/197 (32.99%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+      +       +   ++GY + S  G  ++   V V  V SA        A D   P   AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P VG +     ++ +L
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.472e-23
Identity = 65/197 (32.99%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+      +       +   ++GY + S  G  ++   V V  V SA        A D   P   AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P VG +     ++ +L
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.472e-23
Identity = 65/197 (32.99%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+      +       +   ++GY + S  G  ++   V V  V SA        A D   P   AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P VG +     ++ +L
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.472e-23
Identity = 65/197 (32.99%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+      +       +   ++GY + S  G  ++   V V  V SA        A D   P   AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P VG +     ++ +L
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.147e-23
Identity = 79/235 (33.62%), Postives = 112/235 (47.66%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIG---HKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKG----SALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGA-LAAAAYHQYIL 875
            RA++AE V T LF++  V+  +      K  DA     L  +A A      VLV     +SGGH+NPAVT GL +   ++ +RAV Y+ AQ L +     L++         L GG  T      +G      L  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARSFG A+   +   W +HW++W+GP +G  LA   Y    L
Sbjct:   24 RAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLR--------FLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGD---WTNHWVYWIGPLLGGPLAGFVYESLFL 242          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.219e-22
Identity = 78/240 (32.50%), Postives = 118/240 (49.17%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHK-----KQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV-----ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA----RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            RA  AEF +T LF++++V + I  +     + SDA   +    +A AFG  +F  V+  A +SGGH+NPAVTF   +   +++  A+ Y  +Q LG+        A +   Y S G    T       +G+  G   G   + TF++VYTV  A DP+       +      L  L +G       LA   +TG  +NPARSFG AV+  +   + +  ++W GP VGA  AA  HQ ++
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDA-SSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGS------TFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEG---VLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGH---YSNQAVYWAGPMVGAAVAALVHQALV 242          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.079e-22
Identity = 63/206 (30.58%), Postives = 101/206 (49.03%), Query Frame = 3
Query:  294 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAIC-------------GVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            G+GL+G++ AFG  +  + Y    ISG H+NPAVT GL    +    + + Y++AQ  GAI              G  + K F  + Y++   G       Y+  +    E++ T + ++ +  AT  +  A        APL IG A+ M+HL +IP+T T +NPARS G A ++    A    W+FWV P +G       ++++
Sbjct:   34 GIGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQ------YSMMACFLTEVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAMAQLWLFWVAPLIGGALGGVIYRWL 226          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.079e-22
Identity = 69/220 (31.36%), Postives = 107/220 (48.64%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGAL 845
            + +  + E + + LF+++   +VI +   +      GLL  A A G  + +++     ISGGH NPAV+  + L   +  +  + Y V+Q  G + G  L K     E  +N+ G     V        ALG EI+ T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPAR+FG AV+      WD HWI+W+GP +  L
Sbjct:   36 YIQPCVVELLGSALFIFIGCLSVIENSPNT------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTLVGGLKTMLLIPYWVSQLFGGMIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGVEIVMTMLLVLAVCMG-----AVNEKTMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAG---YWDFHWIYWLGPLLAGL 241          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AQPZ_RHOPA8.442e-2432.04Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ ... [more]
TIP43_MAIZE2.456e-2332.07Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
AQPZ_SHIFL5.472e-2332.99Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI5.472e-2332.99Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]
AQPZ_ECOL65.472e-2332.99Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO575.472e-2332.99Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
TIP41_MAIZE7.147e-2333.62Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP51_ORYSJ1.219e-2232.50Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQPZ_BRAJA2.079e-2230.58Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
AQP8_RAT2.079e-2231.36Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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