DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900113_ssr45 microsatellite DC900113_ssr45:45..71. BLAST: Citrus ESTs to Prunus persica proteins V1
DC900113_ssr67 microsatellite DC900113_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:28..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.079e-22
Identity = 70/220 (31.82%), Postives = 107/220 (48.64%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGAL 845
            + +  I E V + LF+++   +VI +   +      GLL  A A G  + +++     ISGGH NPAV+  + +   +  +  + Y ++Q  G + G  L K     E  +N+ G     V        ALG EII T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPAR+FG AV+      WD HWI+W+GP +  L
Sbjct:   34 YVQPCIVELVGSALFIFIGCLSVIENSPNT------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGIEIILTMLLVLAVCMG-----AVNEKTMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAG---YWDFHWIYWLGPLLAGL 239          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.716e-22
Identity = 67/228 (29.39%), Postives = 113/228 (49.56%), Query Frame = 3
Query:  195 YRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILR 878
            ++   +EF+ TL  +Y    +V      +       LLG     G  +  L++  +G+SG ++NPAVT    L+ +V LI ++ Y+ AQ LG I G G++   + + Y  +  G   +A G N G A   E++ T +L   V   +    +  D  +  +AP  IG A+F+        +G  +NP R  G ++I      W  HW++W+GP VGA+ AA  ++ +L+
Sbjct:   34 FKGFFSEFLGTLYLVYFCGGSVCAAFAVAGDSAARALLG-GLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGCLPNMYR-IDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTS--VFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSII---SGVWSHHWVYWLGPIVGAILAAFIYRCLLQ 254          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.632e-22
Identity = 71/221 (32.13%), Postives = 111/221 (50.23%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            F + L+AE V T   ++   A+++ ++   +    +   GIA  +G ++ VLVY    ISGGH NPAVT      R+  LI+  AY+VAQ LG+I   G ++      ++   G   TV +G N   A   E I TF L++ +       R+     V   A + IG  + +  +   P+TG  +NPARS G A ++     ++  WI+ + P VGA+A A
Sbjct:   36 FLQKLVAEAVGTYFLIFAGCASLVVNENYYNM---ITFPGIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSG---TVPNGTNL-QAFVFEFIMTFFLMFVICGVATDNRA-----VGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGE---YEGIWIYLLAPVVGAIAGA 241          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 4.632e-22
Identity = 78/246 (31.71%), Postives = 120/246 (48.78%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLY-------VSVATVIGHKKQSDACGGVGLLG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA---AVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            S  +  IAEF+ T + ++       V++    G    +    G+GLLG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA  G  +          ++GG GA     G +   A+ AE++GTF+L+ T+      +R+ +       A + IG  V  +      I+G+ +NPAR+FG     +I+     W+ + I+ +GP VGA+ AA  +QY+
Sbjct:    3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP8_NOTAL (Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.050e-22
Identity = 68/220 (30.91%), Postives = 107/220 (48.64%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGAL 845
            + +  + E + + LF+++   +VI +   +      GLL  A A G  + +++     ISGGH NPAV+  + +   +  +  + Y ++Q  G + G  L K     E  +N+ G     V        ALG EII T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPAR+FG AV+      WD HWI+W+GP +  L
Sbjct:   34 YIQPCVVELLGSALFIFIGCLSVIENSPDT------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQIFGGLIGAALAKVVSPEERFWNASGAAFAIVQEQEQVTEALGVEIILTILLVLAVCMG-----AVNEKTMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVVAG---YWDFHWIYWLGPLLAGL 239          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.348e-21
Identity = 75/231 (32.47%), Postives = 108/231 (46.75%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGV---GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGA-LAAAAYHQYIL 875
            RA++AE V T +F++  VA  +       A   +    L G+A A      VLV     +SGGH+NPAVT  L     ++  R+  Y+ AQ L +     L    +++    +    +T+ SG      L  EII TF L++ V++   DP+     S VP   PL  G  V    +A    +G  +NPARSFG A+       W  HWI+W+GP +G  LA   Y    L
Sbjct:   20 RAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLAS----SLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPR-----SSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATG---VWTHHWIYWLGPLIGGPLAGLVYESLFL 238          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.922e-21
Identity = 71/231 (30.74%), Postives = 112/231 (48.48%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHK---KQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAYHQYIL 875
            RA++AE V T LF++  V+  +      K  +A     L  +A A      VLV     +SGGH+NPAVT G+ +   ++ +RA+ Y+ AQ L +     L    +++    +    + + +G      L  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARSFG A+       W +HW++W+GP + G+LA   Y    +
Sbjct:   26 RAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLAS----SLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGPLLGGSLAGFVYESLFM 244          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.542e-20
Identity = 77/249 (30.92%), Postives = 116/249 (46.59%), Query Frame = 3
Query:  159 LIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQS-----DACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIG--TFVLVYT--VFSATDPKR----SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQ 866
            L+D+         R+ +AEF++T LF++ +V + I  +  +      + G +    +A AFG  +F  V   A +SGGH+NPAVTF   +  ++ +  A+ Y  +Q LGA      +  F      S G    T           GA + G  TF+LVYT  V    +P+       R+     L  L +G       LA   +TG  +NPARSFG AV+  + K   +  ++W GP VGA  AA  +Q
Sbjct:    7 LVDLKRCFSAPSLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFG--LFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLF------SAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFK---NQAVYWAGPMVGAAVAALVYQ 244          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.542e-20
Identity = 72/245 (29.39%), Postives = 113/245 (46.12%), Query Frame = 3
Query:  129 KDYVDPXPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            +D  +P P    D        F + LIAEF+ T   ++   A+V+ + +  +    V L GIA  +G  I VL+Y    ISG HINPAVT       +  L +  AY+++Q +G+      ++     +++   G  +        GS L A   E I TF L++ +       R+     +  LA L IG  V +  L   P++   +NP RS G A++Y     +   WI+ V P +GA+A A
Sbjct:   32 EDIHNPRPLKKQDSLLSVSVPFLQKLIAEFLGTYFLVFTGCASVVVNMQNDNV---VTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNRA-----IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVYG---CYKGIWIYLVAPTLGAIAGA 265          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.320e-20
Identity = 68/228 (29.82%), Postives = 114/228 (50.00%), Query Frame = 3
Query:  186 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY----NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            ++F + L+AEF+AT   ++  +  +   +K+    G V   G+A A+G  +  +VY    +SG H+NPAVT G  +A +    RA AY +AQ   A     +++      +     +L GGA+          +L  E + TF L++ + + ATD      D  V  +A + +G  + +  L   P++G  +NPARS G A++ +   A    W++ +GPF GA A A
Sbjct:   53 FTFLQMLLAEFLATFFLMFAGLGAITVEEKK----GAVTFPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAH--------AQSLVIEFVITFYLMFVIMAVATD------DQAVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTAL---WVYILGPFAGAAAGA 259          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AQP8_MOUSE2.079e-2231.82Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
AQPA_DICDI2.716e-2229.39Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
NO26_SOYBN4.632e-2232.13Nodulin-26 OS=Glycine max PE=1 SV=2[more]
AQPM_METTM4.632e-2231.71Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
AQP8_NOTAL6.050e-2230.91Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1[more]
TIP41_ORYSJ1.348e-2132.47Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE3.922e-2130.74Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP51_MAIZE2.542e-2030.92Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
NIP11_ARATH2.542e-2029.39Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
NIP14_ORYSJ3.320e-2029.82Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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