DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900113_ssr45 microsatellite DC900113_ssr45:45..71. BLAST: Citrus ESTs to Prunus persica proteins V1
DC900113_ssr67 microsatellite DC900113_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:28..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.320e-20
Identity = 76/246 (30.89%), Postives = 115/246 (46.75%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLY-------VSVATVIGHKKQSDACGGVGLLG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA---AVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            S  +  IAEF+ T   ++       +++    G    +    G+GLLG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA     +          ++GG GA     G     A+ AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NPAR+FG     +++     W+   I+ +GP VGA+ AA  +QY+
Sbjct:    3 SLTKRCIAEFIGTFFLVFFGAGAAAITLMIASGGTAPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPARTFGPYLNDMVFAGTNLWNYFPIYVIGPVVGAVLAALTYQYL 243          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.670e-19
Identity = 72/227 (31.72%), Postives = 115/227 (50.66%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVS--VATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            + +I+E VAT L ++V+   A++ G   +      +  LG + A G ++ V++Y T  ISG H+NPAVT      R    I+   Y  AQ  GA+C   ++KA + H    +G    T  SG +   AL  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+   AV  N    +   WI+++GP +G L+ A  + YI
Sbjct:   52 KKVISEVVATFLLVFVTCGAASIYGEDNRR-----ISQLGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVL-HPIAVIG---TTTPSGPH-WHALLIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVIGTLSGAWVYTYI 260          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.794e-19
Identity = 71/227 (31.28%), Postives = 113/227 (49.78%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVS--VATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            + +I+E VAT L ++V+   A++ G          +  LG + A G ++ V++Y T  ISG H+NPAVT      R    I+   Y  AQ  GA+C   ++KA ++     +     T  SG +   AL  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+   AV  N    +   WI+++GP VG L+ A  + YI
Sbjct:   55 KKVISEVVATFLLVFVTCGAASIYGEDNAR-----ISQLGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQ----PIAVIGTTTPSGPH-WHALAIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVVGTLSGAWVYTYI 263          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.261e-19
Identity = 78/243 (32.10%), Postives = 110/243 (45.27%), Query Frame = 3
Query:  210 AEFVATLLFLYVSVATVI-------GHKKQSDACGGVGLLG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNND-----KAWDDHWIFWVGPFVGALAAAAYHQYILR 878
            AE V T + ++      +       G  K ++   G+G LG       I  AF   I  ++Y    ISG HINPAVT  L+   +      V Y+VAQ +GA  G  L  A +     ++GG GA     G   G A+  E IGTF+L+  +      +R+      P  A L IG  V  +      ITG+ +NPAR+FG    Y  D       W    I+ +GP VGA+AAA  + Y+ +
Sbjct:   11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAK 245          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.068e-18
Identity = 67/228 (29.39%), Postives = 107/228 (46.93%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            S YR L AEFV TL+ ++   AT I ++K     G   L+G A + G  + +++  T  ISG H+NPAVT      +         Y+ AQ + ++     +KA  +    ++ GG      G ++  AL  E I +F L++ V +     R+     V  LA + +G  V +  L   P T   +NP R+ G A+  NN +A    W++   P +GAL  A  +  +
Sbjct:   77 SLYRKLGAEFVGTLILIFAGTATAIVNQKTD---GAETLIGCAASAGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAVFE---PTMSGGVTVPTVGLSQAFAL--EFIISFNLMFVVTAVATDTRA-----VGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRA---IWVYLTAPILGALIGAGTYTIV 288          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.068e-18
Identity = 69/238 (28.99%), Postives = 115/238 (48.32%), Query Frame = 3
Query:  153 APLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKA--FMKHEYNSLGGG--ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            APL+ +      SF + LI EFV T   ++   + ++ ++        V L GIA  +G ++ V++Y    +SG H NPAV+     ++K    +   Y+ AQ LG+     +++    +  +  SL G     T  S  N  S +  E I TF L++ + +    KR+         A + IG  + +  L + PI+G  +NPARS G A+I+     + D W++ V P +GAL+ A
Sbjct:   34 APLVSV------SFVQKLIGEFVGTFTMIFAGCSAIVVNETYGKP---VTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFV-MEFIATFNLMFVISAVATDKRATGS-----FAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWG---CYKDLWLYIVSPVIGALSGA 253          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.379e-18
Identity = 73/237 (30.80%), Postives = 118/237 (49.79%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVS--VATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALG 902
            + +I+E VAT L ++V+   A++ G   +  +  G  ++G     G ++ V++Y T  ISG H+NPAVT      R    I+   Y  AQ  GA+C   +++A + +    LG    T  +G +   AL  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+   AV  N    +   WI+++GP VG L+ A  + YI    A  A G
Sbjct:   52 KKVISEVVATFLLVFVTCGAASIYGEDMKRISQLGQSVVG-----GLIVTVMIYATGHISGAHMNPAVTLSFAFFRHFPWIQVPFYWAAQFTGAMCAAFVLRAVL-YPIEVLG---TTTPTGPH-WHALVIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VYTGLWIYFLGPVVGTLSGAWVYTYIRFEEAPAAAG 270          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.379e-18
Identity = 64/221 (28.96%), Postives = 106/221 (47.96%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            F + +IAE   T   ++     V  +  ++   G +   G+A  +G  + V+VY    ISG H NPAVT     + +    +  AY++AQ LGA    G ++      +    G   T+ +G ++  +L  EII TF L++ +       R+     +  LA L +G  + +  L   P++G  +NPARS G A++      +   W++ VGP VGA+A A
Sbjct:   42 FIQKIIAEIFGTYFLMFAGCGAVTINASKN---GQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLMFGGRHEHFPG---TLPTG-SEVQSLVIEIITTFYLMFVISGVATDNRA-----IGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALVSGE---YTSIWVYVVGPVVGAVAGA 247          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.107e-18
Identity = 69/225 (30.67%), Postives = 107/225 (47.56%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYH 863
            S  R L AEFV T + ++ + A  I ++K     G   L+G A   G  + +++  T  ISG H+NP++T      R        AY+ AQ   +IC    +K    H + S   G  T+ S  + G A   E I TF+L++ V +     R+     V  LA + +G  V +  L   P TG  +NP R+ G AV   N ++    W++ V P +GA++ AA +
Sbjct:   75 SLTRKLGAEFVGTFILIFTATAGPIVNQKYD---GAETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVF-HPFMS---GGVTIPS-VSLGQAFALEFIITFILLFVVTAVATDTRA-----VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNYRSL---WVYLVAPTLGAISGAAVY 283          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.058e-18
Identity = 66/221 (29.86%), Postives = 102/221 (46.15%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            F + +IAE   T   ++     V  ++ ++   G +   G+A  +G  + V+VY    ISG H NPAVT      R+    +  AY  AQ LGA    G ++      +    G   T+ +G +  S L  E I TF L++ +       R+     +  LA L +G  + +  L   PI+G  +NPARS G A+I      +   W++ VGP  GA+A A
Sbjct:   46 FIQKIIAEIFGTYFLIFAGCGAVTINQSKN---GQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATCRRFPWRQVPAYAAAQMLGATLAAGTLRLMFGGRHEHFPG---TLPAGSDVQS-LVLEFIITFYLMFVISGVATDNRA-----IGELAGLAVGATILLNVLIAGPISGASMNPARSLGPAMIGGE---YRSIWVYIVGPVAGAVAGA 251          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AQPM_METTH3.320e-2030.89Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
NIP22_MAIZE3.670e-1931.72Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
NIP23_MAIZE4.794e-1931.28Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
AQPM_ARCFU6.261e-1932.10Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
NIP61_ARATH1.068e-1829.39Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
NIP31_ARATH1.068e-1828.99Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
NIP22_ORYSJ2.379e-1830.80Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
NIP11_MAIZE2.379e-1828.96Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP51_ARATH3.107e-1830.67Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP11_ORYSJ4.058e-1829.86Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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