DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.105e-15
Identity = 76/250 (30.40%), Postives = 104/250 (41.60%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGAN--TVASG----------YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV---LAPLPIGFAVFMVHLATIPITGTGINPARSFG----AAVIYNNDKA-----WDDHWIFWVGPFVGALAAAAYHQYIL 875
            R   AEF+ TL+ +   V   +       + G    L  AW FG M+ V  Y   GISGGHINPAVT  + + RK    +   Y+VAQ +GA  G  +   +         GG +  T A+G              +A   E IG  +LV  + +  D      DS+ P    +  L IGF V  + +A    T   INPAR  G    A++I     A     W   W  W GP  G +A A  +   +
Sbjct:  348 REPFAEFLGTLVLVIFGVGGNLQATVTKGSGGSYESLSFAWGFGCMLGV--YVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTTATGACLFTDPKSYVTWRNAFFDEFIGASILVGCLMALLD------DSNAPPGNGMTALIIGFLVAAIGMALGYQTSFTINPARDLGPRIFASMIGYGPHAFHLTHWWWTWGAWGGPIAGGIAGALIYDIFI 589          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.105e-15
Identity = 74/257 (28.79%), Postives = 110/257 (42.80%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYILR 878
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I R
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.105e-15
Identity = 74/257 (28.79%), Postives = 110/257 (42.80%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYILR 878
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I R
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.105e-15
Identity = 74/257 (28.79%), Postives = 110/257 (42.80%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYILR 878
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I R
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_STRR6 (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glpF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.443e-15
Identity = 66/230 (28.70%), Postives = 103/230 (44.78%), Query Frame = 3
Query:  204 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGPFVGALAA 851
            L  EF+ TL+ + +    V G           G + I   +G  + V V+ +  +S  H+NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP +GA  A
Sbjct:    5 LFGEFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAHLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALA 227          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.215e-15
Identity = 73/254 (28.74%), Postives = 114/254 (44.88%), Query Frame = 3
Query:  117 HHHGKDYVD----PXPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYH 863
            HHH    VD      P PL+           + + AEF  T   ++  ++T+I  ++     G   LLGIA + G  + VLV     ISG H+NPAV+  + +   +     + Y+ AQ LG+I     VK      Y+ +  G  TV        A   E + TFVL++ + + ATDP      + V  L  + +G  + M  L   P TG  +NPAR+ G A+       +   W++ V   +GA+A   ++
Sbjct:   75 HHHLWHPVDLPKIKPPVPLV-----------KKVGAEFFGTFTLIFTVLSTIIMDEQHK---GVESLLGIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHLPPAHLLPYIAAQILGSITASFAVKGM----YHPVNPGIVTVPK-VGTVEAFFLEFVTTFVLLFIITALATDP------NAVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGR---YTQIWVYLVATPLGAVAGEGFY 300          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP21_ARATH (Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.215e-15
Identity = 64/230 (27.83%), Postives = 107/230 (46.52%), Query Frame = 3
Query:  192 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            F + L+AE V T   ++   A +  + + +     V L+GIA  +G +I VLVYC   +S  H NPAVT  L  +++  L +  AY+  Q +G+      ++       +      +        GS L A   E I T  L+  V + T  KR+  +     L  L IG  V +  +    ++G  +NPARS G A+++     +   WI+ + P +GA++ A  H+ +
Sbjct:   46 FLQKLLAELVGTYYLIFAGCAAIAVNAQHNHV---VTLVGIAVVWGIVIMVLVYCLGHLSA-HFNPAVTLALASSQRFPLNQVPAYITVQVIGSTLASATLRLLFDLNNDVCSKKHDVFLGSSPSGSDLQAFVMEFIITGFLMLVVCAVTTTKRTTEE-----LEGLIIGATVTLNVIFAGEVSGASMNPARSIGPALVWG---CYKGIWIYLLAPTLGAVSGALIHKML 263          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.200e-15
Identity = 74/257 (28.79%), Postives = 111/257 (43.19%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW--IFWVG-------------PFVGALAAA-AYHQYILR 878
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W  + + G             P VGA+  A AY + I R
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFSPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.200e-15
Identity = 63/204 (30.88%), Postives = 93/204 (45.59%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVA-SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 767
            I EF+ T L ++  V  V    K + A  G+  + I W  G  + + VY TAG+SG H+NPAVT  L+        + + Y+++Q LGA     LV A  ++                E  SL G  +T      + G A   E + T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   10 IGEFLGTALLIFFGVGCVAA-LKVAGASFGLWEISIMWGMG--VALAVYATAGLSGAHLNPAVTIALWKFACFDGKKVIPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQESLSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRG---PLAPLLIGILIAVIGGAMGPLTGFAMNPARDFG 207          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.163e-15
Identity = 65/230 (28.26%), Postives = 103/230 (44.78%), Query Frame = 3
Query:  204 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGPFVGALAA 851
            L  EF+ TL+ + +    V G           G + I   +G  + V V+ +  +S  ++NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP +GA  A
Sbjct:    5 LFGEFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALA 227          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
YFF4_YEAST1.105e-1530.40Uncharacterized membrane protein YFL054C OS=Saccha... [more]
GLPF_ECOLI1.105e-1528.79Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL61.105e-1528.79Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO571.105e-1528.79Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_STRR61.443e-1528.70Glycerol uptake facilitator protein OS=Streptococc... [more]
NIP32_ORYSJ3.215e-1528.74Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
NIP21_ARATH3.215e-1527.83Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1... [more]
GLPF_SHIFL4.200e-1528.79Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_HAEIN4.200e-1530.88Glycerol uptake facilitator protein OS=Haemophilus... [more]
GLPF_STRPN7.163e-1528.26Glycerol uptake facilitator protein OS=Streptococc... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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