DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.596e-14
Identity = 58/223 (26.01%), Postives = 100/223 (44.84%), Query Frame = 3
Query:  204 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 872
            LIAE + T   ++     V+ +       G +   GI   +G ++ V++Y T  ISG H NPAVT    + R+    +   Y+ AQ  G++     ++   K    +  G         +   AL AEII +F+L++ +       R+     V  LA + +G  + +      PI+G  +NPARS G A++      +   W++ VGP +G ++    +  I
Sbjct:   45 LIAEMIGTYFIVFSGCGVVVVNVLYG---GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFG----TTPADSPARALVAEIIISFLLMFVISGVATDNRA-----VGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMG---VYKHIWVYIVGPVLGVISGGFVYNLI 252          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.596e-14
Identity = 61/210 (29.05%), Postives = 97/210 (46.19%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKHE--YNSLGGGANTVA----------SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 767
            S +   +AEF+ T L ++     V    K + A  G+  + I W  G  + + +Y +AG+SG H+NPAV+  L+L       +   Y+ AQ  GA C   LV       F++ E   N + G  +++A             + G A   E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:    9 SLFGQCLAEFLGTALLIFFGTGCVAA-LKVAGASFGLWEISIIWGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRG---PLAPLLIGLLIAVIGSAMGPLTGFAMNPARDFG 212          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP33_ORYSJ (Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica GN=NIP3-3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.555e-14
Identity = 69/244 (28.28%), Postives = 111/244 (45.49%), Query Frame = 3
Query:  120 HHGKDYVDPXPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALA 848
            H G   + P   PL+           + + AEF  T + ++  ++T+I  ++         LLGIA + G  + VLV     ISG H+NPA++  + +   +     + Y+ +Q LGA+     VK      Y+ +  G  TV +      A   E I TF L++ + + ATDP      + V  L  + +G  V M  L   P TG  +NPAR+ GAA+       +   W++ V   +GA+A
Sbjct:   53 HLGLRKIIPSSVPLL-----------KKVSAEFFGTFILIFTVLSTIIMDEQHKSI---ETLLGIATSAGLAVTVLVLSLIHISGCHLNPAISIAMAVFGHLPSAHLLPYISSQILGAVAASFAVKGL----YHPVNPGIVTVPN-VGTVEAFFVEFIITFFLLFIITALATDP------NAVKELIAVAVGATVMMNILVAGPSTGASMNPARTIGAAIATGR---YTQIWVYLVATPLGAIA 268          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.064e-14
Identity = 60/224 (26.79%), Postives = 99/224 (44.20%), Query Frame = 3
Query:  204 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGA-------NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            ++AE + T   ++     V+ ++      G V   GI   +G ++ VLVY  + ISG H NPAVT       +    +  +Y+VAQ LG+     +    ++  +   GGGA        T  +G +   A   E + +F L++ V       R+     +  LA L +G  V +  L   P+TG  +NPARS G A++      +   W++   P  G +  A
Sbjct:   66 ILAEILGTYFMIFAGCGAVVVNQSTG---GAVTFPGICAVWGLVVMVLVYTVSHISGAHFNPAVTVAFATCGRFRWKQVPSYVVAQVLGST----MASLTLRVVFGGGGGGARGEHLFFGTTPAG-SMAQAAALEFVISFFLMFVVSGVATDNRA-----IGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGR---YGGVWVYVAAPVSGTVCGA 273          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 70/253 (27.67%), Postives = 101/253 (39.92%), Query Frame = 3
Query:  180 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGAN--TVASG----------YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI-----YNNDKAWDDHWIF----WVGPFVGALAAAAYHQYIL 875
            K+  F+R   AEF+ TL+ +   V + +     + A G    L  AW FG M+ V  Y   GISGGH+NPAVT  L + RK    +   Y+  Q  GA  G  L   +         GG +  T A+G              +A   E IGT VLV  +F+  D   S     +       +G  +  + +A    T   +NPAR  G  +      Y        HW +    W G   G +A    +  ++
Sbjct:  305 KIRHFFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGV--YIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDIRTPATGGCLYTNPKPYVTWRNAFFDEFIGTAVLVGCLFAILDDTNSPPTQGMTAFI---VGLLIAAIGMALGYQTSFTLNPARDLGPRMFAWWIGYGPHSFHLYHWWWTWGAWGGTIGGGIAGGLIYDLVI 552          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP_NOSCE (Aquaporin OS=Nosema ceranae (strain BRL01) GN=AQP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.920e-14
Identity = 60/242 (24.79%), Postives = 99/242 (40.91%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLG-AICGVGLVKAFMKHEYNSLG-GGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-----TDPKRSARDSHVP---------VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            ++ I EF A+ +F +    ++IG  +   + G + ++ +  A  G+  +  +C   I+  H NPA+TF     R++     +  ++ Q  G  I G+  V        N L       VA   ++G   G E   T +LVY  F+      T PK    D   P         + APL IGF +    L  I  +G   NP       ++      WD  W++ +G F G L      +++L
Sbjct:   10 QSYIGEFFASFIFGFAVYTSIIGSAQTGQSAGPI-IVALTIALSGVAIIYSFCD--ITVAHFNPAITFSAMCFRRLPFFGGIFIIIFQVAGFIIAGLASVAVLPGKYKNKLEIARPKRVADNVSRGRIFGTEFFLTAILVYVAFAVGVNPYTPPKDEHGDQLDPDEGLTEGRKITAPLAIGFTLGFCALLGIASSGGAFNPGIVLSPMILTG---TWDFWWVYLLGQFSGGLLGGGLQRFLL 245          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: NIP71_ARATH (Probable aquaporin NIP7-1 OS=Arabidopsis thaliana GN=NIP7-1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.034e-13
Identity = 70/231 (30.30%), Postives = 107/231 (46.32%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICG--VGLVKAFMKHEYNSLGGGANTVAS--GYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWD--DHWIFWVGPFVGALAAAAYHQYI 872
            R ++AE V T + ++ SV  VI   + S   G VGLL  A   G  + V+VY    ISG H+NP++T    +       +   Y+ AQ LGA     VG+         +  G  A+ +A+    +  SA   E+I T ++V+   +           ++  L    IG  + +  L T PI+G  +NPARS G AV+     AWD  D WI+   P +GA+     ++ I
Sbjct:   46 RIVMAELVGTFILMF-SVCGVISSTQLSG--GHVGLLEYAVTAGLSVVVVVYSIGHISGAHLNPSITIAFAVFGGFPWSQVPLYITAQTLGATAATLVGV---------SVYGVNADIMATKPALSCVSAFFVELIATSIVVFLASAL----HCGPHQNLGNLTGFVIGTVISLGVLITGPISGGSMNPARSLGPAVV-----AWDFEDLWIYMTAPVIGAIIGVLTYRSI 255          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP3_MOUSE (Aquaporin-3 OS=Mus musculus GN=Aqp3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.931e-13
Identity = 67/257 (26.07%), Postives = 107/257 (41.63%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV--------KAFMKHEY-----NSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG----------AAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            R  +AE + TL+ +     +V          GG   + +A+ F   + +LV     +SG H+NPAVTF +    +   I+   Y +AQ LGA  G G+V         AF  +E      N   G   T  SG+ +  +    + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG           + ++   + W   W+  V P +G++A    +Q ++
Sbjct:   23 RQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLGILV--AGQVSGAHLNPAVTFAMCFLAREPWIKLPIYALAQTLGAFLGAGIVFGLYYDAIWAFANNELFVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTAALIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTALAGWGSEVFTTGRHW--WWVPIVSPLLGSIAGVFVYQLMI 265          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP3_BOVIN (Aquaporin-3 OS=Bos taurus GN=AQP3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.757e-13
Identity = 64/260 (24.62%), Postives = 108/260 (41.54%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT--VASGYNKGSALGA---------------EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG----------AAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            R  +AE + TL+ +     +V          GG   + +A+ F   + +L+     +SG H+NPAVTF +    +   I+   Y +AQ LGA  G G++       Y+++   AN   + SG N  + + A               + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG           + ++   + W   W+  V P +G++A    +Q ++
Sbjct:   23 RQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLGILI--AGQVSGAHLNPAVTFAMCFLAREPWIKLPVYTLAQTLGAFLGAGIIFGLY---YDAIWAFANNQLIVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTASLIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTAIAGWGSEVFTTGRHW--WWVPIVSPLLGSIAGVFVYQLMI 265          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_BACSU (Glycerol uptake facilitator protein OS=Bacillus subtilis GN=glpF PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.951e-12
Identity = 56/234 (23.93%), Postives = 93/234 (39.74%), Query Frame = 3
Query:  201 ALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG------GGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-------NNDKAWDDHWIFWVGPFVGALAAAAYH 863
            A   E + T+L +        G   +       G + + + +G  + +  Y   GISG H+NPA+T  L             Y+ AQ +GAI G  ++       + S        G  +T  S  +  + + +E+IGTFVLV  + +         +     L PL +GF +  + ++    TG  INPAR  G  + +            W   W+  VGP +G      ++
Sbjct:    3 AFWGEVIGTMLLIIFGAGVCAGVNLKKSLSFQSGWIVVVFGWGLGVAMAAYAVGGISGAHLNPALTIALAFVGDFPWKEVPVYIAAQMIGAIIGAVIIYLHYLPHWKSTDDPAAKLGVFSTGPSIPHTFANVLSEVIGTFVLVLGILAI------GANQFTEGLNPLIVGFLIVAIGISLGGTTGYAINPARDLGPRIAHAFLPIPGKGSSNWKYAWVPVVGPILGGSFGGVFY 230          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
NIP41_ARATH1.596e-1426.01Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
GLPF_PSEAE1.596e-1429.05Glycerol uptake facilitator protein OS=Pseudomonas... [more]
NIP33_ORYSJ3.555e-1428.28Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica G... [more]
NIP12_ORYSJ6.064e-1426.79Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
YI7H_SCHPO7.920e-1427.67Uncharacterized membrane protein C977.17 OS=Schizo... [more]
AQP_NOSCE7.920e-1424.79Aquaporin OS=Nosema ceranae (strain BRL01) GN=AQP ... [more]
NIP71_ARATH1.034e-1330.30Probable aquaporin NIP7-1 OS=Arabidopsis thaliana ... [more]
AQP3_MOUSE3.931e-1326.07Aquaporin-3 OS=Mus musculus GN=Aqp3 PE=2 SV=1[more]
AQP3_BOVIN8.757e-1324.62Aquaporin-3 OS=Bos taurus GN=AQP3 PE=2 SV=1[more]
GLPF_BACSU1.951e-1223.93Glycerol uptake facilitator protein OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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