DC900113

Overview
NameDC900113
Unique NameDC900113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP3_RAT (Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.951e-12
Identity = 66/257 (25.68%), Postives = 106/257 (41.25%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV--------KAFMKHEY-----NSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG----------AAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            R  +AE + TL+ +     +V          GG   + +A+ F   + +LV     +SG H+NPAVTF +    +   I+   Y +AQ LGA  G G+V         AF  +E      N   G   T  SG+ +  +    + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG           + ++   + W   W+  V P +G++     +Q ++
Sbjct:   23 RQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLAILV--AGQVSGAHLNPAVTFAMCFLAREPWIKLPIYTLAQTLGAFLGAGIVFGLYYDAIWAFAGNELVVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTAALIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTALAGWGSEVFTTGQNW--WWVPIVSPLLGSIGGVFVYQLMI 265          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.346e-12
Identity = 67/257 (26.07%), Postives = 101/257 (39.30%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKH--EYNSLGG----------------GANTVASGYNKG-------SALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-------NNDKAWDDHWIFWVGPFV-GALAAAAYH 863
            I E + T L + +          ++      G L IA+ +G  +    Y +  +SG H+NPAVT G+ + +         Y   Q LGA+ G  LV       F  H  +   +GG                GA  V   ++ G         L  EIIGTFVL+  + +      +   + + +L  L  GF V  + L+    TG  INP R  G  +++            W   WI  VGP + GA+A   Y+
Sbjct:    8 IGETIGTALLILLGGGVCAAVTLKASKARNAGWLAIAFGWGFAVMTAAYISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWVAYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILT---QGLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWIPVVGPLIGGAIAGGVYN 260          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.346e-12
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA++AEF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVLAEFLATLLFVFFGLGSALNWPQAMPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.676e-12
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+ AEF+ATL+F++  + + +  ++   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFAEFLATLIFVFFGLGSALNWQQSLPS-----VLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.676e-12
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+++EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA+ Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVLSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP3_HUMAN (Aquaporin-3 OS=Homo sapiens GN=AQP3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.413e-12
Identity = 61/257 (23.74%), Postives = 104/257 (40.47%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV--------------KAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG----------AAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            R  +AE + TL+ +     +V          GG   + +A+ F   + +L+     +SG H+NPAVTF +    +   I+   Y +AQ LGA  G G+V              + F+     + G  A   +   +  +    + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG           + ++   + W   W+  V P +G++A    +Q ++
Sbjct:   23 RQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLGILI--AGQVSGAHLNPAVTFAMCFLAREPWIKLPIYTLAQTLGAFLGAGIVFGLYYDAIWHFADNQLFVSGPNGTAGIFATYPSGHLDMINGFFDQFIGTASLIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTALAGWGSAVFTTGQHW--WWVPIVSPLLGSIAGVFVYQLMI 265          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.682e-12
Identity = 56/228 (24.56%), Postives = 94/228 (41.23%), Query Frame = 3
Query:  198 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAF-------GGMIFVLVYCTAGISGGHINPAVTFGLFLA--RKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 854
            RA  A+ V T  FL+V   + +G    +     + L G+ +A          ++FV       + G   NP      + A     SL      + AQ  GA+ G   +   M  +Y  + GG +     +   +  GAE++ TFV+   V          +    P++    I      + L+    TG  +NPA +FG A + N    W+  +++W+ PF+GA+ AA
Sbjct:    8 RAAAADAVVT--FLWVLCVSTLGASTTA-VTSYLRLQGVHFALLVTVSLLSVLLFVFNILCDALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPH---TGAGAELVLTFVITLAVLLII-----VKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFIGAILAA 224          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP9_HUMAN (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.682e-12
Identity = 61/255 (23.92%), Postives = 105/255 (41.18%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG--------------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVP-VLAPLPIGFAVFMVHLATIPITGTGINPAR-----------SFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 875
            S  +  ++EF+ T + + +    V          GGV  + + ++    + + +Y   G+SGGHINPAV+  + L  ++   +   Y+ AQ LGA  G   V         S  GG              A   A   +  +A   +++ T +L+  VF+  D    +R+   P  L P+ IG  + ++  +    +G  +NPAR            +G  V    +  W   WI  VGP VGA+     +  ++
Sbjct:   21 SLAKETLSEFLGTFILIVLGCGCVAQAILSRGRFGGVITINVGFSMA--VAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFD----SRNLGAPRGLEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFRAGNNFW---WIPVVGPLVGAVIGGLIYVLVI 266          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP9_RAT (Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.264e-11
Identity = 64/265 (24.15%), Postives = 109/265 (41.13%), Query Frame = 3
Query:  207 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG--------------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVP-VLAPLPIGFAVFMVHLATIPITGTGINPAR-----------SFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPS 923
            ++EF+ T + + +  +++       +  GG+  + I   F   + + +Y T GISGGHINPAV+F +    ++   +   Y+ AQ LGA  G   V         +  GG              A   A   +   A   +++ T  L+  VF+  D    +R+  VP  L P+ IG  + ++  +    +G  +NPAR            +G  V    +  W   WI  VGP +GA      +   ++    K     ++ PS
Sbjct:   27 LSEFLGTFIMIVLGCSSIAQAVLSRERFGGIITINIG--FASAVVMALYVTFGISGGHINPAVSFAMCAFGRMEWFKFPFYVGAQFLGAFVGAATVFGIYYDGLMAFAGGKLLVVGENATAFIFATYPAPFISTPGAFVDQVVSTMFLLLIVFAMFD----SRNLGVPRGLEPVVIGLLIIVLSCSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFTVGNNFW---WIPVVGPMIGAFLGGLIYILFIQMHHSKLDPDMKAEPS 282          
BLAST of DC900113 vs. ExPASy Swiss-Prot
Match: AQP2_ELEMA (Aquaporin-2 (Fragment) OS=Elephas maximus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.651e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  189 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 494
            +F RA+ +EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAALL 99          
The following BLAST results are available for this feature:
BLAST of DC900113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
AQP3_RAT1.951e-1225.68Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1[more]
GLPF_STRCO4.346e-1226.07Probable glycerol uptake facilitator protein OS=St... [more]
AQP2_HORSE4.346e-1240.20Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]
AQP2_TALEU5.676e-1240.20Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]
AQP2_PROHA5.676e-1240.20Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
AQP3_HUMAN7.413e-1223.74Aquaporin-3 OS=Homo sapiens GN=AQP3 PE=2 SV=2[more]
SIP12_MAIZE9.682e-1224.56Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1[more]
AQP9_HUMAN9.682e-1223.92Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1[more]
AQP9_RAT1.264e-1124.15Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1[more]
AQP2_ELEMA1.651e-1140.20Aquaporin-2 (Fragment) OS=Elephas maximus GN=AQP2 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900113 VSS Citrus sinensis cDNA clone VS27V27 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900113 ID=DC900113; Name=DC900113; organism=Citrus sinensis; type=EST; length=960bp
GCGTGCTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAA
GAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGA
AGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCANCAC
CAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGA
GCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGT
TGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTG
GCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTT
TACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTT
TGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACA
TGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCC
TTCATGAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGC
TTCTGGCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCT
TCGTGCTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCT
CGTGACTCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGT
GTTCATGGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACC
CTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGG
GATGACCATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGC
AGCGGCATACCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGG
GATCATTCCGCAGCAACCCTTCAAACTAAGAAAGCAAATTATGATGAATA
TGAACCACCA
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