CN185969

Overview
NameCN185969
Unique NameCN185969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D ++    +VD+    G+ MPL  M +GTIIHNIEV  G+GG+L R+AGT A+++      + ++RL SG ++L+  RCR TIG VSNP H    + KAG++RWLGR+P  RGV+MNP+DHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDSVVAGN-YVDVKP--GNVMPLGNMPVGTIIHNIEVKIGKGGQLARSAGTYAQLVGRD-QDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRNRWLGRKPHNRGVSMNPIDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_SINMW (50S ribosomal protein L2 OS=Sinorhizobium medicae (strain WSM419) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRT-SGGRH 245          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 68/143 (47.55%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V ++++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGNRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 73/143 (51.05%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + +VRL SG ++L+  RC ATIG VSNP H    + KAG+SRWLGR+P  RGV MNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDTVLAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRKPHNRGVTMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RHIME (50S ribosomal protein L2 OS=Rhizobium meliloti GN=rplB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRT-SGGRH 245          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = 1
Query:  373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            +A  D   ++G+ +PL  + +GT IHNIE+ PG+GG+LVRAAG SA+IL      +  VRLPSG  +LI  +C AT+GTV    H   KL KAG++RWLG RP VRG AMNPVDHPHGGGEG  K+ G H
Sbjct:  117 VAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGRQ-GDYVQVRLPSGEIRLIHKKCMATVGTVGLAEHELIKLGKAGRARWLGIRPTVRGTAMNPVDHPHGGGEG--KTFGKH 243          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_HERA2 (50S ribosomal protein L2 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 1
Query:  373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGN 759
            MA  +   ++G+ +PLA + IG+ IHNIE+ PG+GG+LVR+AG +A+++     ++  VRLPSG  +++  +C AT+G V N  H    + KAG+SRWLGRRPVVRG AMNPVDHPHGGGEGR+ +  N
Sbjct:  117 MAGPNAEIRVGNALPLANIPIGSQIHNIELTPGRGGQLVRSAGNTAQLMARE-GNYATVRLPSGEMRMVHIKCMATLGQVGNVDHQNIMIGKAGRSRWLGRRPVVRGSAMNPVDHPHGGGEGRAPTGMN 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 70/143 (48.95%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V DK++      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +LI   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGDKVISSQ---DADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
The following BLAST results are available for this feature:
BLAST of CN185969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BRAJA6.984e-3350.3550S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_SINMW9.121e-3348.9550S ribosomal protein L2 OS=Sinorhizobium medicae ... [more]
RL2_RICM59.121e-3347.5550S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RHOPB9.121e-3351.0550S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHIME9.121e-3348.9550S ribosomal protein L2 OS=Rhizobium meliloti GN=... [more]
RL2_PERMH9.121e-3355.3850S ribosomal protein L2 OS=Persephonella marina (... [more]
RL2_HERA29.121e-3351.9450S ribosomal protein L2 OS=Herpetosiphon aurantia... [more]
RL2_RICCK1.191e-3248.9550S ribosomal protein L2 OS=Rickettsia canadensis ... [more]
RL2_RICBR1.191e-3250.3550S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB81.191e-3250.3550S ribosomal protein L2 OS=Rickettsia bellii (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185969 ID=CN185969; Name=CN185969; organism=Citrus sinensis; type=EST; length=763bp
GGAAAAACTCTCACGCTGGCCGTCACCTTTCTTCTCAGTGTGATCACCCA
TCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTTTAGCTTC
TGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACAGAAGAAA
ACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAATGGCTTT
GTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTTCTCTGTC
CTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTCTGAAACC
GAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAGAAACTGT
GCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAATTCTCAAA
TTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCATCATTCAC
AACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAGCTGCGGG
GACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGTTTAGTAA
GACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCGAGCCACC
ATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTAGGAAGGC
TGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGAGTAGCCA
TGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAGCAAAAGT
AGTGGTAACCATG
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