CN185969
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33 Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P++ V D ++ +VD+ G+ MPL M +GTIIHNIEV G+GG+L R+AGT A+++ + ++RL SG ++L+ RCR TIG VSNP H + KAG++RWLGR+P RGV+MNP+DHPHGGGEGR+ S G H Sbjct: 107 PQRLAVGDSVVAGN-YVDVKP--GNVMPLGNMPVGTIIHNIEVKIGKGGQLARSAGTYAQLVGRD-QDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRNRWLGRKPHNRGVSMNPIDHPHGGGEGRT-SGGRH 244
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_SINMW (50S ribosomal protein L2 OS=Sinorhizobium medicae (strain WSM419) GN=rplB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P++ V DK++ VD+ G+ MPL + +G+IIHN+E+ PG+GG++ R+AGT A+++ ++RL SG ++L+ C A+IG VSNP HG KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+ S G H Sbjct: 107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRT-SGGRH 245
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 68/143 (47.55%), Postives = 101/143 (70.63%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P+K +V ++++ D + +IG+C+PL C+ IGT +HN+E+ G+GG++ R+AGTS ++ + S + ++L SG +L+ C+ATIG++SNP L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H Sbjct: 107 PQKLSVGNRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 73/143 (51.05%), Postives = 99/143 (69.23%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P++ V D ++ A+VD+ G+ MPL M IGTI+HN+E+ G+GG++ R+AGT A+++ + +VRL SG ++L+ RC ATIG VSNP H + KAG+SRWLGR+P RGV MNPVDHPHGGGEGR+ S G H Sbjct: 107 PQRLAVGDTVLAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRKPHNRGVTMNPVDHPHGGGEGRT-SGGRH 244
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RHIME (50S ribosomal protein L2 OS=Rhizobium meliloti GN=rplB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 70/143 (48.95%), Postives = 97/143 (67.83%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P++ V DK++ VD+ G+ MPL + +G+IIHN+E+ PG+GG++ R+AGT A+++ ++RL SG ++L+ C A+IG VSNP HG KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+ S G H Sbjct: 107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRT-SGGRH 245
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = 1 Query: 373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 +A D ++G+ +PL + +GT IHNIE+ PG+GG+LVRAAG SA+IL + VRLPSG +LI +C AT+GTV H KL KAG++RWLG RP VRG AMNPVDHPHGGGEG K+ G H Sbjct: 117 VAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGRQ-GDYVQVRLPSGEIRLIHKKCMATVGTVGLAEHELIKLGKAGRARWLGIRPTVRGTAMNPVDHPHGGGEG--KTFGKH 243
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_HERA2 (50S ribosomal protein L2 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 1 Query: 373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGN 759 MA + ++G+ +PLA + IG+ IHNIE+ PG+GG+LVR+AG +A+++ ++ VRLPSG +++ +C AT+G V N H + KAG+SRWLGRRPVVRG AMNPVDHPHGGGEGR+ + N Sbjct: 117 MAGPNAEIRVGNALPLANIPIGSQIHNIELTPGRGGQLVRSAGNTAQLMARE-GNYATVRLPSGEMRMVHIKCMATLGQVGNVDHQNIMIGKAGRSRWLGRRPVVRGSAMNPVDHPHGGGEGRAPTGMN 244
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32 Identity = 70/143 (48.95%), Postives = 100/143 (69.93%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P+K +V DK++ D + +IG+C+PL + IGT +HN+E+ G+GG++ R+AGTS ++ + S + ++L SG +LI C+ATIG++SNP L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H Sbjct: 107 PQKLSVGDKVISSQ---DADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32 Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P+K V DKI+ D + +IG+C+PL + IGT +HN+E+ G+GG++ R+AGTS ++ + S + ++L SG +L+ C ATIGTVSNP L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H Sbjct: 107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32 Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 1 Query: 334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762 P+K V DKI+ D + +IG+C+PL + IGT +HN+E+ G+GG++ R+AGTS ++ + S + ++L SG +L+ C ATIGTVSNP L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H Sbjct: 107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244 The following BLAST results are available for this feature:
BLAST of CN185969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185969 ID=CN185969; Name=CN185969; organism=Citrus sinensis; type=EST; length=763bpback to top |