CN185969

Overview
NameCN185969
Unique NameCN185969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_OCHA4 (50S ribosomal protein L2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 70/143 (48.95%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V DK++   A   ++ + G+ MPLA M +GTI+HN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDKVV---AGNSVDVKPGNAMPLASMPVGTIVHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVPGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_GLUOX (50S ribosomal protein L2 OS=Gluconobacter oxydans GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D+++   AH D+    G+ MPL  M +GTI+HNIE+  G GGKL R+AGT A+++ +  + +  V+L SG  +L+   C AT+G VSNP +  + + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRVKVGDRVISG-AHTDVKP--GNAMPLGAMPVGTIVHNIELKQGAGGKLARSAGTYAQLVGKD-AGYAQVKLQSGELRLVRGECMATVGAVSNPDNMNQHMGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_DICTD (50S ribosomal protein L2 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 70/124 (56.45%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  373 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M+  +++ ++G+ +PL  +  GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+SRWLGRRP VRG AMN VDHPHGGGEG++
Sbjct:  117 MSGENVDIKVGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGKE-GKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNAVDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 70/143 (48.95%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D ++   A  +++ + G+ MPL  M +GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP HG     KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLGVGDSVV---AGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-HGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_GEOKA (50S ribosomal protein L2 OS=Geobacillus kaustophilus GN=rplB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  364 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M  M+  D + +IG+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTSA++L +    + +VRL SG  ++I  +CRAT+G V N  H    + KAG++RWLG RP VRG  MNPVDHPHGGGEG++
Sbjct:  114 MEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIVRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BACST (50S ribosomal protein L2 OS=Bacillus stearothermophilus GN=rplB PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  364 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M  M+  D + +IG+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTSA++L +    + +VRL SG  ++I  +CRAT+G V N  H    + KAG++RWLG RP VRG  MNPVDHPHGGGEG++
Sbjct:  114 MEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIVRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICAH (50S ribosomal protein L2 OS=Rickettsia akari (strain Hartford) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.032e-32
Identity = 68/143 (47.55%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K +V D++M      D + +IG+C+PL  + +GT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSVGDRVMSSQ---DADIKIGNCLPLKFIPVGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDRKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.032e-32
Identity = 73/143 (51.05%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+   V DKI+      +IN  +G+C+PL  + +GTIIHNIE+ PG+GG++ R+AGT A +L +  S +  ++  SG  + I    RAT+G+VSN  H      KAG+ RWLGRRPVVRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PRNLNVGDKIISS-DKAEIN--VGNCLPLEVIPVGTIIHNIEIKPGKGGQVARSAGTYAVLLNKD-SGYAQIKFRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRVRWLGRRPVVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.032e-32
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  364 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 744
            M  M+  D + ++G+ +PL  + +GT +HNIE+ PG+GG+LVRAAGTSA++L +    + +VRL SG  ++I   CRAT+G V N  H   K+ KAG++RWLG RP VRG  MNPVDHPHGGGEG++
Sbjct:  114 MEIMSGPDADIKVGNALPLENIPVGTFVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIVRLASGEVRMILGACRATVGEVGNEQHELVKIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKA 239          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BARHE (50S ribosomal protein L2 OS=Bartonella henselae GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.032e-32
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D ++   ++VDI    G+ MPL  M +GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP H      KAG+SRW GRRP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLDVGDSVIAG-SNVDIKP--GNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-QGMAILRLNSGEQRLVSSGCFATVGAVSNPDHANINDGKAGRSRWRGRRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
The following BLAST results are available for this feature:
BLAST of CN185969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_OCHA41.191e-3248.9550S ribosomal protein L2 OS=Ochrobactrum anthropi ... [more]
RL2_GLUOX1.191e-3250.3550S ribosomal protein L2 OS=Gluconobacter oxydans ... [more]
RL2_DICTD1.191e-3256.4550S ribosomal protein L2 OS=Dictyoglomus turgidum ... [more]
RL2_BART11.191e-3248.9550S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_GEOKA1.556e-3251.9750S ribosomal protein L2 OS=Geobacillus kaustophil... [more]
RL2_BACST1.556e-3251.9750S ribosomal protein L2 OS=Bacillus stearothermop... [more]
RL2_RICAH2.032e-3247.5550S ribosomal protein L2 OS=Rickettsia akari (stra... [more]
RL2_ORITI2.032e-3251.0550S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_GEOSW2.032e-3251.9750S ribosomal protein L2 OS=Geobacillus sp. (strai... [more]
RL2_BARHE2.032e-3250.3550S ribosomal protein L2 OS=Bartonella henselae GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185969 ID=CN185969; Name=CN185969; organism=Citrus sinensis; type=EST; length=763bp
GGAAAAACTCTCACGCTGGCCGTCACCTTTCTTCTCAGTGTGATCACCCA
TCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTTTAGCTTC
TGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACAGAAGAAA
ACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAATGGCTTT
GTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTTCTCTGTC
CTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTCTGAAACC
GAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAGAAACTGT
GCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAATTCTCAAA
TTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCATCATTCAC
AACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAGCTGCGGG
GACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGTTTAGTAA
GACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCGAGCCACC
ATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTAGGAAGGC
TGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGAGTAGCCA
TGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAGCAAAAGT
AGTGGTAACCATG
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