CN185969

Overview
NameCN185969
Unique NameCN185969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 68/143 (47.55%), Postives = 102/143 (71.33%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K ++ D+++   A  DI  +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS +++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNP+DHPHGGGEG++ S G H
Sbjct:  107 PQKLSIGDRVISSQA-ADI--KIGNCLPLKSIPIGTTLHNVEMKVGKGGQIARSAGTSVELVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPIDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RICPR (50S ribosomal protein L2 OS=Rickettsia prowazekii GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/143 (48.25%), Postives = 102/143 (71.33%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+K ++ D+++   A  DI  +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS +++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PQKLSIGDRVISSQA-ADI--KIGNCLPLKSIPIGTTLHNVEMKIGKGGQIARSAGTSVELVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_RHISN (50S ribosomal protein L2 OS=Rhizobium sp. (strain NGR234) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/143 (48.25%), Postives = 96/143 (67.13%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++    DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAAGDKVIASDKAVDVKP--GNTMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRT-SGGRH 245          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_ORITB (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Boryong) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 73/143 (51.05%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P+   V DKI+      +IN  +G+C+ L  + +GTIIHNIE+ PG+GG++ R+AGT A +L +  S +  ++L SG  + I    RAT+G+VSN  H      KAG+ RWLGRRPVVRGVAMNPVDHPHGGGEG++ S G H
Sbjct:  107 PRNLNVGDKIISS-DKAEIN--VGNCLSLEVIPVGTIIHNIEIKPGKGGQIARSAGTYAVLLNKD-SGYAQIKLRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRVRWLGRRPVVRGVAMNPVDHPHGGGEGKT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 1
Query:  385 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            D   + G+ + L  + +GTIIHNIE+ PG+GG+L RAAGT A+IL +    +  ++LPSG  +LI   C+ATIG V N  H    + KAG+ RWLG+RP VRGVAMNPVDHPHGGGEGR+ S+G H
Sbjct:  121 DAEIKPGNALKLKNIPVGTIIHNIELKPGKGGQLARAAGTMAQILAKE-GKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAGRKRWLGKRPHVRGVAMNPVDHPHGGGEGRT-STGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRUSU (50S ribosomal protein L2 OS=Brucella suis GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/143 (48.25%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRUSI (50S ribosomal protein L2 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/143 (48.25%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRUMB (50S ribosomal protein L2 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/143 (48.25%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRUC2 (50S ribosomal protein L2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/143 (48.25%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
BLAST of CN185969 vs. ExPASy Swiss-Prot
Match: RL2_BRUAB (50S ribosomal protein L2 OS=Brucella abortus GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.527e-32
Identity = 69/143 (48.25%), Postives = 99/143 (69.23%), Query Frame = 1
Query:  334 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNH 762
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+ S G H
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRT-SGGRH 244          
The following BLAST results are available for this feature:
BLAST of CN185969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RICTY4.527e-3247.5550S ribosomal protein L2 OS=Rickettsia typhi GN=rp... [more]
RL2_RICPR4.527e-3248.2550S ribosomal protein L2 OS=Rickettsia prowazekii ... [more]
RL2_RHISN4.527e-3248.2550S ribosomal protein L2 OS=Rhizobium sp. (strain ... [more]
RL2_ORITB4.527e-3251.0550S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_HALOH4.527e-3254.7650S ribosomal protein L2 OS=Halothermothrix orenii... [more]
RL2_BRUSU4.527e-3248.2550S ribosomal protein L2 OS=Brucella suis GN=rplB ... [more]
RL2_BRUSI4.527e-3248.2550S ribosomal protein L2 OS=Brucella suis (strain ... [more]
RL2_BRUMB4.527e-3248.2550S ribosomal protein L2 OS=Brucella melitensis bi... [more]
RL2_BRUC24.527e-3248.2550S ribosomal protein L2 OS=Brucella canis (strain... [more]
RL2_BRUAB4.527e-3248.2550S ribosomal protein L2 OS=Brucella abortus GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185969 ID=CN185969; Name=CN185969; organism=Citrus sinensis; type=EST; length=763bp
GGAAAAACTCTCACGCTGGCCGTCACCTTTCTTCTCAGTGTGATCACCCA
TCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTGGGGTGCTTTAGCTTC
TGTCACCGCCGGCAACATGTTGTGATAGACAGTGAAATCAACAGAAGAAA
ACAAAACGTAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAATGGCTTT
GTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTTCTCTGTC
CTTCCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTCTGAAACC
GAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAGAAACTGT
GCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAATTCTCAAA
TTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCATCATTCAC
AACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAGCTGCGGG
GACGTCAGCCAAGATTTTGAAAGAACCCACTTCAAGCTTCTGTTTAGTAA
GACTACCTTCTGGTAATGAGAAACTGATTGACACTAGATGTCGAGCCACC
ATTGGTACAGTGTCTAACCCAAGCCATGGAGCTAAGAAGCTTAGGAAGGC
TGGTCAGAGCCGTTGGTTGGGTCGAAGACCTGTGGTTAGAGGAGTAGCCA
TGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGACGAAGCAAAAGT
AGTGGTAACCATG
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