DC900110

Overview
NameDC900110
Unique NameDC900110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3863 contig Csv1_Contig3863:64..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900110 vs. ExPASy Swiss-Prot
Match: FADS2_XENLA (Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = -3
Query:  274 VTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 585
            VT + H+   + H          K  DW   Q + T +I  S + DWF G L FQ+EHHLFP +PR    KI+P+VR LC K+N+ Y     +      +R+L+
Sbjct:  339 VTQMNHLPMAIEH---------EKYQDWLNTQLAATCNIEPSFFNDWFSGHLNFQIEHHLFPTMPRHNYWKIAPLVRSLCSKYNVTYEEKCLYHGFRDVLRSLK 433          
BLAST of DC900110 vs. ExPASy Swiss-Prot
Match: FADS1_PAPAN (Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = -3
Query:  274 VTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 585
            VT + HI   ++H          +  DW   Q   T ++  S++ DWF G L FQ+EHHLFP +PR    K++P+V+ LC KH + Y+S     A    I +L+
Sbjct:  337 VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPMMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431          
BLAST of DC900110 vs. ExPASy Swiss-Prot
Match: FADS1_HUMAN (Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = -3
Query:  274 VTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLR 585
            VT + HI   ++H          +  DW   Q   T ++  S++ DWF G L FQ+EHHLFP +PR    K++P+V+ LC KH + Y+S     A    I +L+
Sbjct:  337 VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431          
BLAST of DC900110 vs. ExPASy Swiss-Prot
Match: FAD2L_MOUSE (Fatty acid desaturase 2-like protein OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = -3
Query:  265 KGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTLRGAA 516
            + +DW   Q   T +I  S + DWF G L FQ+EHHLFP +PR    K++P+V+ LC KH + Y +    +A    +R+L+ +A
Sbjct:  395 ENHDWLSTQVVATCNIEQSFFNDWFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLQYINKPILKAFGDIVRSLKKSA 478          
BLAST of DC900110 vs. ExPASy Swiss-Prot
Match: FADS2_DANRE (Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = -3
Query:  277 VTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTL 585
            VT + HI   +++          K  DW   Q   T +I  S++ DWF G L FQ+EHHLFP +PR    + +P VR LC+K+ + Y+  + + A    IR+L
Sbjct:  337 VTQMSHIPMNIDY---------EKNQDWLSMQLVATCNIEQSAFNDWFSGHLNFQIEHHLFPTVPRHNYWRAAPRVRALCEKYGVKYQEKTLYGAFADIIRSL 430          
BLAST of DC900110 vs. ExPASy Swiss-Prot
Match: FADS1_RAT (Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = -3
Query:  319 VTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRS 585
            VT + HI   ++H          +  DW   Q   T ++  S++ +WF G L FQ+EHHLFP +PR    K++P+V+ LC K+ + Y S
Sbjct:  340 VTQMNHIPMHIDH---------DRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYES 419          
BLAST of DC900110 vs. ExPASy Swiss-Prot
Match: FADS1_MOUSE (Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = -3
Query:  319 VTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRS 585
            VT + HI   ++H          +  DW   Q   T ++  S++ +WF G L FQ+EHHLFP +PR    K++P+V+ LC K+ + Y S
Sbjct:  340 VTQMNHIPMHIDH---------DRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYES 419          
The following BLAST results are available for this feature:
BLAST of DC900110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FADS2_XENLA1.421e-1336.54Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2... [more]
FADS1_PAPAN1.856e-1335.58Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 P... [more]
FADS1_HUMAN1.856e-1335.58Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 P... [more]
FAD2L_MOUSE1.203e-1239.29Fatty acid desaturase 2-like protein OS=Mus muscul... [more]
FADS2_DANRE1.018e-1135.92Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE... [more]
FADS1_RAT1.737e-1135.96Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fa... [more]
FADS1_MOUSE1.737e-1135.96Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 P... [more]

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Properties
Property NameValue
Genbank descriptionDC900110 VSS Citrus sinensis cDNA clone VS27V24 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900110 ID=DC900110; Name=DC900110; organism=Citrus sinensis; type=EST; length=713bp
TTACAACTGTGAATACAAAAATATTGCTAGAAAGAGCATTTATTCATCAT
CCTATACGAATGACGACCCCAAGCCAAGAGGCCAAATCAAGAGCCAAAAA
AATATTCGTTGGGGGCAAAATAACTTGTGGCTATAAAATCTCGATAGGCA
TCTGTTANTGTATTTTATATATTAAAAAAAGAAAAACACAACTCAGCCAT
GAGTATTAAGAGCTTCCCAAAGCAAATTCTTGGGGACAGGGTTTGTGAGG
TCCCGAGCTTGCAGAGCAGCACCCCTCAGAGTCCTAATGGTCCACACATT
GGCCTCAAAGAAGGACAAACTTCTGTAAGGCATATTGTGCTTCTTGCAAA
GATCCCTCACCACCGGCGAAATCTTCCTCAATTGGCACCTTGGCAACCTT
GGAAACAAATGATGCTCTAGCTGAAACTGCAACCCACCATGAAACCAATC
CATCCAAGATGAGCAAGCAATATCCAATGTCCCACTTGTTTGCTTCTCAA
ACCAGTCATTCCCTTTAGGCGGACCAAGATACACGTTTGCAGCAAAGTGG
TTTAAACAAAACTGAATGTGTTGGATGGCCGTGACAGTAAAACTTGCCAT
CACAAACATCACCCTTTCAGGCCAGTTTGGTAGATATGAAACTAGAAGTG
GGAACCAAGTCCAAAGACAAGAGTACCCATGATGTTCAAGGCTCTATCTG
GGACCTTACGCTT
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