CN185965

Overview
NameCN185965
Unique NameCN185965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig181 contig Csv1_Contig181:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 92/178 (51.69%), Postives = 124/178 (69.66%), Query Frame = -3
Query:  215 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSV 748
            IYDEF ++ V +AK+ VVG+PFD    QGPQVD+ QF +IL YI  GK+EGA LL            I+PT+F +V + M IAK EIFGPVM ++KFKT+EE +  ANN+ +GLAA + TKDL+ AN +S++++AG +W+NCY  F +  P+GGYKMSG GR+ G   L  Y +VK+V
Sbjct:  331 IYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 508          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.663e-47
Identity = 92/178 (51.69%), Postives = 123/178 (69.10%), Query Frame = -3
Query:  215 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSV 748
            IY+EF ++ VE+AK  VVG PFDP   QGPQ+DKKQ+++IL  I+ G  EGA L             IEPT+F+NVT+DM IAK EIFGPV  +++FKTV+E I+ ANN+  GL A + T D+N A TVS +++AG +WINCY A ++  P+GG+KMSG GR+ G   L  Y +VK+V
Sbjct:  332 IYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGITEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTVDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGESGLREYSEVKTV 509          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.705e-47
Identity = 90/178 (50.56%), Postives = 126/178 (70.79%), Query Frame = -3
Query:  215 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSV 748
            +YDEF ++ V +AK+ VVG+PFD    QGPQVD+ QF +IL YI+ G++EGA LL            I+PT+F +V + M IAK EIFGPVM ++KFKT+EE +  AN++++GLAA + TKDL+ AN +S++++AG +WINCY  F +  P+GGYKMSG GR+ G   L  Y +VK+V
Sbjct:  333 VYDEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFKKILGYIKSGQQEGAKLLCGGGAAADRGYFIQPTVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.705e-47
Identity = 90/178 (50.56%), Postives = 125/178 (70.22%), Query Frame = -3
Query:  215 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSV 748
            +Y EF ++ V +AK+ VVG+PFD    QGPQVD+ QF+++L YI+ GK EGA LL            I+PT+F +V + M IAK EIFGPVM ++KFKT+EE +  ANN+++GLAA + TKDL+ AN +S++++AG +WINCY  F +  P+GGYKMSG GR+ G   L  Y +VK+V
Sbjct:  314 VYAEFVERSVARAKSRVVGNPFDSQTEQGPQVDETQFNKVLGYIKSGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLQAYTEVKTV 491          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.839e-47
Identity = 91/182 (50.00%), Postives = 124/182 (68.13%), Query Frame = -3
Query:  203 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPL 748
            IY+EF ++ VE+AK  VVG PFDP   QGPQ+DKKQ+++IL  I+ G  EGA L             IEPT+F+NVT+DM IAK EIFGPV  +++FKT++E I+ ANN+  GL A + T D+N A TVS +++AG +WINCY A ++  P+GG+KMSG GR+ G   L  Y +VK+V   +
Sbjct:  332 IYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKI 513          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 90/182 (49.45%), Postives = 123/182 (67.58%), Query Frame = -3
Query:  203 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPL 748
            IY+EF K+ VE+AK  +VG PFDP   QGPQ+DKKQ+++IL  I+ G  EGA L             IEPT+F+NVT+DM IAK EIFGPV  +++FKT++E I+ ANN+  GL A + T D+N A  VS +++AG +WINCY A ++  P+GG+KMSG GR+ G   L  Y +VK+V   +
Sbjct:  332 IYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKI 513          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.839e-46
Identity = 89/178 (50.00%), Postives = 124/178 (69.66%), Query Frame = -3
Query:  215 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSV 748
            IY EF ++ V +A++ VVG+PFD    QGPQ+D+ QF +IL YI+ GK EGA LL            I+PT+F +V + M IAK EIFGPVM ++KFKT+EE I  ANN+++GLAA + TKDL+ AN +S++++AG +W+NCY  F +  P+GGYK+SG GR+ G   L  Y +VK+V
Sbjct:  335 IYAEFVERSVARARSRVVGNPFDSRTEQGPQIDETQFKKILGYIKSGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVIGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTV 512          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.839e-46
Identity = 89/182 (48.90%), Postives = 123/182 (67.58%), Query Frame = -3
Query:  203 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPL 748
            IY+EF K+ VE+AK  +VG PFDP   QGPQ+DKKQ++++L  I+ G  EGA L             IEPT+F+NVT+DM IAK EIFGPV  +++FKT++E I+ ANN+  GL A + T D+N A  VS +++AG +WINCY A ++  P+GG+KMSG GR+ G   L  Y +VK+V   +
Sbjct:  332 IYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKI 513          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.350e-46
Identity = 88/178 (49.44%), Postives = 124/178 (69.66%), Query Frame = -3
Query:  215 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSV 748
            IY EF ++ V +AK+ VVG+PFD    QGPQVD+ QF ++L YI+ GK EGA LL            I+PT+F +V + M IAK EIFGPVM ++KFK++EE +  ANN+++GLAA + TKDL+ AN +S++++AG +W+NCY  F +  P+GGYK+SG GR+ G   L  Y +VK+V
Sbjct:  334 IYAEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFKKVLGYIKSGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTV 511          
BLAST of CN185965 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.318e-44
Identity = 89/182 (48.90%), Postives = 123/182 (67.58%), Query Frame = -3
Query:  203 IYDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRILSYIEHGKREGAPLLTXXXXXXXXXXXIEPTIFTNVTEDMLIAKNEIFGPVMALMKFKTVEEAIKSANNTRHGLAAGIMTKDLNVANTVSRSIRAGIIWINCYFAFDSDCPYGGYKMSGFGRDCGLESLHNYLQVKSVVTPL 748
            +Y EF ++ VE AK   VGDPFD    QGPQ+D+KQFD+IL  IE GK+EGA L             I+PT+F++VT++M IAK EIFGPV  ++KFK +EE IK AN+T +GL A + TK+L+ A  ++ ++ +G +WINCY AF +  P+GG+KMSG GR+ G  +L  Y +VK+V   L
Sbjct:  326 VYGEFVRRSVEFAKKRPVGDPFDAKTEQGPQIDQKQFDKILELIESGKKEGAKLECGGSAMEDRGLFIKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKL 507          
The following BLAST results are available for this feature:
BLAST of CN185965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 428
Match NameE-valueIdentityDescription
ALDH2_HUMAN1.274e-4751.69Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
AL1A2_CHICK1.663e-4751.69Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
ALDH2_MOUSE3.705e-4750.56Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
ALDH2_HORSE3.705e-4750.56Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
AL1A2_HUMAN4.839e-4750.00Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1A2_RAT1.408e-4649.45Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
ALDH2_PIG1.839e-4650.00Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
AL1A2_MOUSE1.839e-4648.90Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
ALDH2_BOVIN5.350e-4649.44Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
AL1A3_MOUSE1.318e-4448.90Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185965 ID=CN185965; Name=CN185965; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTAAATATCAATGTAGTATTAATATTATTCCCTTT
AGAGGTAATACAAAAACCCTTGTATCTTATGAGAGCCCTTTAATGAGAAT
AATTTGCAAACCCCAAACTCAGAAAGTCTTGCAACTTTAATCAGCCACCA
CTTATTTTTTCAAACCTGGGTGGGTAAGTGTTCACAGCCAAGGAGAATGG
GAAAGGGGAGTCACAACGGACTTGACCTGCAAATAGTTATGTAGAGATTC
CAGTCCACAGTCTCTACCAAATCCACTCATCTTGTATCCTCCGTAAGGGC
AGTCGCTGTCAAAAGCAAAATAACAATTGATCCATATAATGCCTGCTCGA
ATTGATCTAGAGACGGTATTAGCCACATTCAAGTCCTTTGTCATAATGCC
TGCTGCTAGGCCATGTCGGGTATTATTTGCACTCTTAATTGCCTCCTCAA
CAGTCTTGAATTTCATCAATGCCATCACAGGTCCGAAAATTTCATTCTTT
GCTATCAGCATGTCTTCCGTAACATTTGTGAAAATTGTAGGCTCAATATA
ATACCCCTTCTTGCCGATAGGCTTACCCCCTGTTAACAATGGGGCTCCTT
CCCTCTTGCCATGCTCAATGTACGAAAGAATTCTATCGAACTGCTTCTTA
TCGACCTGGGGTCCTTGACGAACTGCAGGATCAAAAGGATCACCAACTAC
CCAAGCTTTTGCCTTTTCGACCAACTTCTTTTCAAATTCATCATAAATTC
CTT
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