CN185956

Overview
NameCN185956
Unique NameCN185956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:28..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185956 vs. ExPASy Swiss-Prot
Match: PDK_SCHPO ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC644.11c PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = 1 
Query:  346 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYG--SAPDFNIYGDPSFTFPYVPSHL 729
            +F  ++  I+ RH+NV   +AL +Q+ +++ +     +  + I  FLDRFYMSRIGIRML+GQ++ L +  P  + +G I T+ +  Q+   A+E+A  +C   YG   AP+  I  DPS    YV SHL
Sbjct:  166 NFAYLLNTIRTRHDNVAVEIALDIQEYRRKTN-----QIDNSIQIFLDRFYMSRIGIRMLLGQYIALVSEPPRENYVGVISTRANIYQIIEGAAENAKYICRLAYGLFEAPEIQIICDPSLEMMYVESHL 290
The following BLAST results are available for this feature:
BLAST of CN185956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK_SCHPO3.428e-1838.46[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185956 ID=CN185956; Name=CN185956; organism=Citrus sinensis; type=EST; length=729bp
CGTCAGAAGCCAGAAGCAGCAATGGCTGCTAAGAAATTGTCCTAGACGTT
TTCGAAGAGCTTGATCGAGGAGGTTGGGCGATGGGGATGCATGAAACAGA
CAGGTGTGAGCTTGAGGTACATGATGGAGTTTGGCTCAAAACCTACAGAC
AAGAATTTGCTAATTTCTGCTCAGTTTCTTCACAAAGAGCTTCCAATTAG
AATCGCCAGACGAGCAATTGAGCTCGAGACACTTCCTTACGGTTTATCCG
AGAAGCCTGCCGTTTTGAAGGTTCGAGACTGGTATTTGGACTCATTTCGT
GATTTGAGGTCGTTTCCTGACATCAGAAGTACGAGTGATGAGAGGGATTT
TACGCAAATGATTAAGGCGATTAAGGTGAGGCATAATAATGTGGTGCCCA
TGATGGCGTTGGGGCTGCAACAATTGAAGAAAGAGATGGATCCCAAGATT
GTTTACGAGGATCTTCATGAGATTCATCAGTTTCTGGATCGGTTTTACAT
GTCTAGGATCGGAATTCGTATGCTTATTGGGCAGCATGTAGAATTGCACA
ATCCCAACCCTCCACCTCATTGTATTGGCTACATAGACACAAAAATGTCT
CCAGTGCAGGTTGCTAGGAATGCTAGTGAGCATGCACATTGTGTTTGTCT
GCGGGAGTATGGCAGTGCACCCGATTTTAATATCTACGGTGATCCCAGTT
TTACATTCCCTTACGTCCCTTCACACTTG
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