CN185955

Overview
NameCN185955
Unique NameCN185955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK1_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.021e-37
Identity = 96/225 (42.67%), Postives = 137/225 (60.89%), Query Frame = -3
Query:  168 IRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYG----DPSFTFP--YVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASKEIY 809
            IRML+ QH  L     +P+   H IG I+     V+V ++  E+A  +C   Y ++P+  +       P  T    YVPSHL+ MVFEL KN++RA  E + D   V PPI++ V  G ED+T+K+SD GGG+P S + ++F Y+YSTA  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  +S E LP  + A+ + Y
Sbjct:  191 IRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPELELEELNAKSPGQTIQVVYVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLSKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTESVERLPVYNKAAWKHY 409          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK4_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.789e-37
Identity = 99/249 (39.76%), Postives = 138/249 (55.42%), Query Frame = -3
Query:   87 RMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 806
            RML+ QH+ + + +    P  IG ID     V V ++A E A  +C + Y ++P+ N+        G P     YVPSHLH M+FEL KN++RA  E + ++     P+   V  G ED+TIK+SD GGG+P     ++F+Y YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + SM GYGTDA ++L  L            +S+ +   PV N    S F  YQ S  + D  I
Sbjct:  170 RMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVQDAFECAKMLCDQYYLTSPELNLTQVNGKFPGQP-IHIVYVPSHLHHMLFELFKNAMRATVE-HQENRPSLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYGTDAIIYLKAL------------SSESVEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.148e-36
Identity = 95/226 (42.04%), Postives = 136/226 (60.18%), Query Frame = -3
Query:  168 IRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASKEIY 809
            IRML+ QH  L     +P+   H IG I+     V+V ++  E+A  +C   Y ++P+  +        G P     YVPSHL+ MVFEL KN++RA  E + D   V PPI++ V  G ED+T+K+SD GGG+P   + ++F Y+YSTA  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  +S E LP  + A+ + Y
Sbjct:  191 IRMLLNQHSLLFGGKGSPSHRKH-IGSINPNCDVVEVIKDGYENARRLCDLYYVNSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTESIERLPVYNKAAWKHY 409          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK4_RHIFE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rhinolophus ferrumequinum GN=PDK4 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.499e-36
Identity = 88/213 (41.31%), Postives = 131/213 (61.50%), Query Frame = -3
Query:  198 RMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL-GDSQEPLP 806
            RML+ QH+ + + +    P  IG ID   +   V ++A E +  +C + Y ++P+  +        G+P     YVPSHLH M+FEL KN++RA  E + +++    P+ + V  G ED+TIK+SD GGG+P     ++F+Y+YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L  L  +S E LP
Sbjct:  170 RMLMNQHILIFSDSQTGNPSHIGSIDPNCNVAAVVQDAFECSRMLCDQYYLTSPELKLTQVNGKFPGEP-IHIVYVPSHLHHMLFELFKNAMRATVE-HQENEPSLTPVEVTVVLGKEDLTIKISDRGGGVPLRITDRLFSYMYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLHLYSLSGYGTDAIIYLKALSSESVEKLP 376          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK4_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.340e-36
Identity = 99/249 (39.76%), Postives = 136/249 (54.62%), Query Frame = -3
Query:   87 RMLIGQHVELHNPNPP--PHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQEPLP*ISTASKEIYGSPVMNFNATSKFSSYQNSRNSIDGII 806
            RML+ QH+ + + +    P  IG ID     V V  +A E A  +C + Y ++P+  +        G P     YVPSHLH M+FEL KN++RA  E + ++     P+   V  G ED+TIK+SD GGG+P     ++F+Y YSTA  P+ +N+  A     +AG+GYGLPISRLYA+YF GDL + SM GYGTDA ++L  L            +S+ I   PV N    S F  YQ S  + D  I
Sbjct:  170 RMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVEDAFECAKMLCDQYYLTSPELKLTQVNGKFPGQP-IHIVYVPSHLHHMLFELFKNAMRATVE-HQENRPFLTPVEATVVLGKEDLTIKISDRGGGVPLRITDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSMSGYGTDAIIYLKAL------------SSESIEKLPVFN---KSAFKHYQMSSEADDWCI 397          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK1_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.697e-36
Identity = 94/230 (40.87%), Postives = 138/230 (60.00%), Query Frame = -3
Query:  162 IRMLIGQHVELH------NPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASKEIYGS 809
            IRML+ QH  L       +P+   H IG I+   + ++V ++  E+A  +C   Y ++P+  +        G P     YVPSHL+ MVFEL KN++RA  E + +   V PPI++ V  G ED+T+K+SD GGG+P   + ++F Y+YSTA  P  E +        +AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++  L  DS E LP  + A+ + Y +
Sbjct:  191 IRMLLNQHSLLFGGKGKGSPSHRKH-IGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRATMEHHANRG-VYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKAAWKHYNT 413          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.657e-35
Identity = 93/222 (41.89%), Postives = 132/222 (59.46%), Query Frame = -3
Query:  177 IRMLIGQHVELHN---PNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP*ISTASK 809
            IRML  QH+ +     P  P H +G ID       V  +A E+A  +C R Y ++P   +        G P  +   VPSHL+ M+FEL KN++RA  E Y   D   P I++ V  G ED++IK+ D GGG+ R+ L +++ Y+YSTA  P  + T     +  +AGYGYGLP+SRLYARYF GDL ++SMEG+GTDA ++L  +  ++ E LP  ST+S+
Sbjct:  162 IRMLQNQHLVVFGNVLPESPRH-VGCIDPACDVESVVYDAFENARFLCDRYYLTSPSMKLEMHNAVEKGKP-ISIVAVPSHLYHMMFELFKNAMRATVE-YHGVDDDLPDIKVYVVKGQEDLSIKICDRGGGVSRTILERLYNYMYSTAPPPPRDGT-----QAPLAGYGYGLPLSRLYARYFLGDLFLVSMEGHGTDACIYLKAVPVEASEVLPIYSTSSR 375          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: BCKD_MOUSE ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.026e-33
Identity = 78/212 (36.79%), Postives = 118/212 (55.66%), Query Frame = -3
Query:  207 GIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 812
            GIRML   H+ LH   P    +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         NPL  + D+      G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  199 GIRMLATHHLALHEDKPD--FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRINPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: BCKD_HUMAN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.026e-33
Identity = 78/212 (36.79%), Postives = 119/212 (56.13%), Query Frame = -3
Query:  207 GIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 812
            GIRML   H+ LH   P    +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         +PL  + D+   A  G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  199 GIRMLATHHLALHEDKPD--FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: BCKD_RAT ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.895e-33
Identity = 77/212 (36.32%), Postives = 118/212 (55.66%), Query Frame = -3
Query:  207 GIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 812
            GIRML   H+ LH   P    +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         +PL  + D+      G M G+G+GLP SR YA Y GG LQ+ S++G GTD YL L  +   +E
Sbjct:  199 GIRMLATHHLALHEDKPD--FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE 408          
The following BLAST results are available for this feature:
BLAST of CN185955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PDK1_MOUSE3.021e-3742.67[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_MOUSE8.789e-3739.76[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_RAT1.148e-3642.04[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RHIFE1.499e-3641.31[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_RAT3.340e-3639.76[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_HUMAN5.697e-3640.87[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDHK2_CAEEL1.657e-3541.89Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]
BCKD_MOUSE2.026e-3336.79[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_HUMAN2.026e-3336.79[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_RAT5.895e-3336.32[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185955 ID=CN185955; Name=CN185955; organism=Citrus sinensis; type=EST; length=814bp
GAGGAGGAATATACAGAAAGCTGCCAATTTATTAGGACCACAATTGACAG
CAATTCATATCTTGGACAAATTGTATAGCTTTCTTTAATAATTCCATCAA
TTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGAAGTTGCATTGAAG
TTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAATTCAGGG
CAAGGGTTCTTGAGAATCCCCCAAGCGCGACAAATGGAGATATGCATCAG
TTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAATACCGA
GCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCATTGTTCC
CTTGTCAGCTGCTAGATCAGTGTTTTCATCCAGAGGGTTTCTGGCAGTGC
TGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATGCCACCT
CCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGCAACTAT
TATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCTCTTCAA
CAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAGATGCAAGTGT
GAAGGGACGTAAGGGAATGTAAAACTGGGATCACCGTAGATATTAAAATC
GGGTGCACTGCCATACTCCCGCAGACAAACACAATGTGCATGCTCACTAG
CATTCCTAGCAACCTGCACTGGAGACATTTTTGTGTCTATGTAGCCAATA
CAATGAGGTGGAGGGTTGGGATTGTGCAATTCTACATGCTGCCCAATAAG
CATACGAATTCCGA
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