CN185955

Overview
NameCN185955
Unique NameCN185955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: BCKD_BOVIN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.006e-32
Identity = 77/212 (36.32%), Postives = 118/212 (55.66%), Query Frame = -3
Query:  207 GIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGDSQE 812
            GIRML   H+ LH   P    +G I T++SP ++     + A  +C  +YG+AP   I G  +  FP++P  L  ++ EL+KN++RA  E ++D+    P + I +A+   D+ I++SD GGGI    L ++  Y ++TA         +PL  + DL      G M G+G+GLP SR YA Y GG L++ S++G GTD YL L  +   +E
Sbjct:  199 GIRMLATHHLALHEDKPD--FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDIDLVIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDLHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLRLQSLQGIGTDVYLRLRHIDGREE 408          
BLAST of CN185955 vs. ExPASy Swiss-Prot
Match: PDK_YEAST ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Saccharomyces cerevisiae GN=PKP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.776e-13
Identity = 47/178 (26.40%), Postives = 93/178 (52.25%), Query Frame = -3
Query:  231 IGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIYGDPS--FTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYST--ARNPLDENTDLAADK-GTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHL 749
            IG +   +   Q+ ++ S++ + +C  ++ +     +   PS   TF  +P  L  ++ E+ KN+  A  +  +  + +   I ++  D  +++ +++ D GGGI       +F Y YST   ++   E+TDL  ++   ++G G+GLP+ + Y   FGG + + S+ G+GTD Y+ L
Sbjct:  208 IGILHRDLPIAQLIKHVSDYVNDICFVKFNTQRTPVLIHPPSQDITFTCIPPILEYIMTEVFKNAFEA--QIALGKEHMPIEINLLKPDD-DELYLRIRDHGGGITPEVEALMFNYSYSTHTQQSADSESTDLPGEQINNVSGMGFGLPMCKTYLELFGGKIDVQSLLGWGTDVYIKL 382          
The following BLAST results are available for this feature:
BLAST of CN185955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
BCKD_BOVIN1.006e-3236.32[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
PDK_YEAST6.776e-1326.40[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002C04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185955 ID=CN185955; Name=CN185955; organism=Citrus sinensis; type=EST; length=814bp
GAGGAGGAATATACAGAAAGCTGCCAATTTATTAGGACCACAATTGACAG
CAATTCATATCTTGGACAAATTGTATAGCTTTCTTTAATAATTCCATCAA
TTGAGTTACGAGAATTTTGATAACTGCTAAACTTTGAAGTTGCATTGAAG
TTCATGACAGGGCTCCCGTAAATCTCCTTAGAAGCAGTTGAAATTCAGGG
CAAGGGTTCTTGAGAATCCCCCAAGCGCGACAAATGGAGATATGCATCAG
TTCCATATCCTTCCATGGAGATAATTTGCAAATCTCCTCCAAAATACCGA
GCATACAAACGGCTTATTGGAAGCCCATATCCATACCCAGCCATTGTTCC
CTTGTCAGCTGCTAGATCAGTGTTTTCATCCAGAGGGTTTCTGGCAGTGC
TGTAAAGATATGTGAAAATTTTGGGAAGACCACTTCTTGGTATGCCACCT
CCCTCATCCGAAACCTTAATAGTAACATCCTCTAATCCATCGGCAACTAT
TATTCGAATAGGAGGTGCAACTTTATCTGAGTCCATATAACGCTCTTCAA
CAGCACGTAATGAGTTCTTAACCAACTCAAATACCATGAGATGCAAGTGT
GAAGGGACGTAAGGGAATGTAAAACTGGGATCACCGTAGATATTAAAATC
GGGTGCACTGCCATACTCCCGCAGACAAACACAATGTGCATGCTCACTAG
CATTCCTAGCAACCTGCACTGGAGACATTTTTGTGTCTATGTAGCCAATA
CAATGAGGTGGAGGGTTGGGATTGTGCAATTCTACATGCTGCCCAATAAG
CATACGAATTCCGA
back to top