DC900103

Overview
NameDC900103
Unique NameDC900103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8932 contig Csv1_Contig8932:41..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: HINT1_MOUSE (Histidine triad nucleotide-binding protein 1 OS=Mus musculus GN=Hint1 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = -3
Query:  202 MASXNEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQMNWPPG 588
            MA     A  A P    TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S A++    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+HIH+ +LGGRQMNWPPG
Sbjct:    1 MADEIAKAQVAQPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVADDDDESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG 126          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: HINT1_PONAB (Histidine triad nucleotide-binding protein 1 OS=Pongo abelii GN=HINT1 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  202 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQMNWPPG 537
            TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+ +  +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+ +LGGRQM+WPPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDNESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: HINT1_HUMAN (Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = -3
Query:  202 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQMNWPPG 537
            TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+    +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+ +LGGRQM+WPPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_SYNY3 (Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803) GN=slr1234 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.539e-27
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  202 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQMNWPPG 537
            TIF KII +EIP+ +VYEDD  LAF+D++PQAP H+L+IPK    L  LS A      +LG LL  AK VA   G+ D FR+VIN+G   GQ+VFH+H+ +LGGR  +WPPG
Sbjct:    5 TIFSKIIRREIPAAIVYEDDLCLAFKDVNPQAPVHVLLIPKKP--LPQLSAATPEDHALLGHLLLKAKEVAADLGIGDQFRLVINNGAEVGQTVFHLHLHILGGRPFSWPPG 114          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_AQUAE (Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus GN=aq_141 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = -3
Query:  202 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAK------QEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQMNWPPG 534
            IF KI+  E+P+K VYEDDKVLAF DI+P AP HILIIP  K  + G+   E     ++G + Y A+ +A+       E L  G+R+V N G + GQSVFH+H+ L+GGR+M+WPPG
Sbjct:    7 IFCKIVRGEVPAKKVYEDDKVLAFHDINPVAPVHILIIP--KKHIMGIQTLEPEDECLVGHMFYVARKIAEDLGIAPDENLNKGYRLVFNVGKDAGQSVFHLHLHLIGGREMSWPPG 121          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: HINT_SHIFL (HIT-like protein hinT OS=Shigella flexneri GN=hinT PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  217 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 537
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+ LLGGR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: HINT_ECOLI (HIT-like protein hinT OS=Escherichia coli (strain K12) GN=hinT PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  217 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 537
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+ LLGGR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: HINT_ECO57 (HIT-like protein hinT OS=Escherichia coli O157:H7 GN=hinT PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  217 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 537
            TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+ LLGGR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: Y961_HAEIN (HIT-like protein HI0961 OS=Haemophilus influenzae GN=HI0961 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 56/109 (51.38%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  217 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIP-KVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 537
            TIF KII KEIP+ +VY+D+ V AFRDI PQA THILIIP KV   +  +++ +E     LGRL   A  +AK+EG+ EDG+R+++N   +GGQ VFH+H+ L+GG  +
Sbjct:    5 TIFSKIIRKEIPANIVYQDELVTAFRDISPQAKTHILIIPNKVIPTVNDVTEQDE---VALGRLFSVAAKLAKEEGVAEDGYRLIVNCNKHGGQEVFHLHMHLVGGEPL 110          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: PKIA_DICDI (Protein pkiA OS=Dictyostelium discoideum GN=pkiA PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = -3
Query:  202 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAE-ERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQMNWPPG 537
            TIF KII+  IPSK  Y+D+  +A  DI+PQAP H+L+IPK+   GL+ ++  + E++ E +G ++     +A  +G  D +R+VIN+G  G QSV  +H+ +LGGRQMNWPPG
Sbjct:   15 TIFAKIISGAIPSKKFYDDEYCIAIEDINPQAPVHLLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHIASLKG-ADSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG 127          
The following BLAST results are available for this feature:
BLAST of DC900103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HINT1_MOUSE8.717e-3151.94Histidine triad nucleotide-binding protein 1 OS=Mu... [more]
HINT1_PONAB1.487e-3054.46Histidine triad nucleotide-binding protein 1 OS=Po... [more]
HINT1_HUMAN2.536e-3054.46Histidine triad nucleotide-binding protein 1 OS=Ho... [more]
YHIT_SYNY31.539e-2754.46Uncharacterized HIT-like protein slr1234 OS=Synech... [more]
YHIT_AQUAE1.440e-2549.57Uncharacterized HIT-like protein aq_141 OS=Aquifex... [more]
HINT_SHIFL1.440e-2552.78HIT-like protein hinT OS=Shigella flexneri GN=hinT... [more]
HINT_ECOLI1.440e-2552.78HIT-like protein hinT OS=Escherichia coli (strain ... [more]
HINT_ECO571.440e-2552.78HIT-like protein hinT OS=Escherichia coli O157:H7 ... [more]
Y961_HAEIN2.542e-2251.38HIT-like protein HI0961 OS=Haemophilus influenzae ... [more]
PKIA_DICDI1.262e-2146.49Protein pkiA OS=Dictyostelium discoideum GN=pkiA P... [more]

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Properties
Property NameValue
Genbank descriptionDC900103 VSS Citrus sinensis cDNA clone VS27V18 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900103 ID=DC900103; Name=DC900103; organism=Citrus sinensis; type=EST; length=668bp
CGACAAACCACACCCTTATTATTGAAGGTCTTTTTCTCCTTTCAGCACAA
TGTCATTTCACATCATATCAAATAATGNGGCTCAAAGCAGCCACCAATTA
GTTTGTTATTTGAAGCTCGATGCAGCTTGATGCATATTAAAGTNCAAAGG
GCATAATCATTTTTTCATAAGAGAATCTGGCNCCCAAAATACTTCATCTT
AGCCCGGGGGCCAGTTCATTTGTCGTCCTCCTAGGAGGNGGACGTGGATG
TGAAAAACTGATTGACCTCCATTTGGCCCATCATTAATCACAATCCTAAA
GCCGTCTTCTAGTCCTTCCTGTTTAGCAACAAGCTTAGCAGNGTAAAGAA
GGCGGCCAAGAATTTCGCAATGCCTTTCCTCGGCCTTTGAAAGTCCAGTC
AAGCCATCCTTCACTTTGGGAATAATTAGAATGTGTGTAGGAGCTTGGGG
ATCTATGTCCCTAAAGGCTAAGACCTTATCATCCTCATAAACAACTTTAG
ATGGGATTTCTTTGTTAATTATTTTGTCAAATATGGTAGGCGAATCAGAA
GGAACGGCTGCAACAGCAGCCTCGTTCTNTGAAGCCATGACGACGGCAGA
CAAATGAGACGTCAGCACTGCAAGTCGGCTGCTTGTGCTTGCTGCATTGC
CAACATCCGAGGCGGTGG
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