CN185949

Overview
NameCN185949
Unique NameCN185949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 36/86 (41.86%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   11 EDEEHKKKVDAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            +D++ K++V+ +N LE+ AY+++N VKD EK+G KL   + K IEDA D+AI+W+++N  AE  +++ +   LES+  PI++K+Y+
Sbjct:  550 QDKQVKERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDYKKQKANLESVVQPIVSKLYE 635          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 32/87 (36.78%), Postives = 61/87 (70.11%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            + EDE+ ++ + A+N LE Y +N++ ++  E   SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  525 REEDEKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSDADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 32/87 (36.78%), Postives = 61/87 (70.11%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            + EDE+ ++ + A+N LE Y +N++ ++  E   SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  525 REEDEKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSEADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.251e-14
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 262
            K EDE+  K++ AKN LE+YAY+++ T  +++   K++ + ++    A D  I WLD NQ A A+E++DK KELE   N ++  +Y
Sbjct:  524 KEEDEKEAKRIAAKNGLESYAYSLKQTTSEKQFEEKVEASKREAFTKACDDTIAWLDENQTATAEEYDDKRKELEQAGNEVLKDLY 609          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.251e-14
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 2
Query:   11 EDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            EDE H++++ A+N LE Y + ++     E  G ++  ADK  I +   +A++WLDSN  AE +E+E K+KELE  C+PI+ KM++
Sbjct:  526 EDERHRQRIAARNQLETYLFGVKEAA--ENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEYEYKLKELEQFCSPIMTKMHK 608          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.133e-14
Identity = 35/85 (41.18%), Postives = 59/85 (69.41%), Query Frame = 2
Query:   11 EDEEHKKKVDAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 262
            ED+  ++KV+AKN L+NY  +M+ TV+D +K+  K++  DK  I  A+  A  WL++N  A+++  + K+K+LE++C PII K+Y
Sbjct:  550 EDKNLREKVEAKNKLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLY 634          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFA (78 kDa glucose-regulated protein homolog (Fragment) OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 35/85 (41.18%), Postives = 59/85 (69.41%), Query Frame = 2
Query:   11 EDEEHKKKVDAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 262
            ED+  ++KV+AKN L+NY  +M+ TV+D +K+  K++  DK  I  A+  A  WL++N  A+++  + K+K+LE++C PII K+Y
Sbjct:  174 EDKNLREKVEAKNNLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLY 258          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP73_PLAFA (Heat shock 70 kDa protein PPF203 (Fragment) OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELE 229
            K EDE++K +++A+N LENY YN++NT++DE + +K+   D +K    +   + WL+ NQ AE +E+ +K K+ E
Sbjct:  126 KEEDEQNKNRIEARNNLENYCYNVKNTLQDENLKTKIPKDDSEKCMKTVKSVLDWLEKNQTAETEEYNEKEKDTE 200          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 33/86 (38.37%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   11 EDEEHKKKVDAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLD-SNQLAEADEFEDKMKELESICNPIIAKMY 262
            ED+  K++++A+N LENYAY+++    D E++G K+DP DK+ + DA++   +WL+   + A  +EFED+ ++L+++ +PI  K+Y
Sbjct:  556 EDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 33/86 (38.37%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   11 EDEEHKKKVDAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 262
            ED+  +++++A+N LENYA++++N V DE  +G K+D  DK+ I DA+ +A  WL+ N   A A++F+++ ++L ++  PI +K+Y
Sbjct:  560 EDKATRERIEARNGLENYAFSLKNQVNDEDGLGGKIDEEDKETILDAVKEAQDWLEENAATASAEDFDEQKEKLSNVAYPITSKLY 645          
The following BLAST results are available for this feature:
BLAST of CN185949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
GRP78_ECHGR3.291e-1541.8678 kDa glucose-regulated protein OS=Echinococcus g... [more]
HSP72_ANOAL5.613e-1536.78Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_ANOAL5.613e-1536.78Heat shock protein 70 A1 OS=Anopheles albimanus GN... [more]
HSP72_PICAN1.251e-1439.53Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HSP68_DROME1.251e-1441.18Heat shock protein 68 OS=Drosophila melanogaster G... [more]
GRP78_PLAFO2.133e-1441.1878 kDa glucose-regulated protein homolog OS=Plasmo... [more]
GRP78_PLAFA2.786e-1441.1878 kDa glucose-regulated protein homolog (Fragment... [more]
HSP73_PLAFA1.383e-1340.00Heat shock 70 kDa protein PPF203 (Fragment) OS=Pla... [more]
GRP78_SCHPO2.358e-1338.3778 kDa glucose-regulated protein homolog OS=Schizo... [more]
GRP78_NEUCR3.080e-1338.3778 kDa glucose-regulated protein homolog OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185949 ID=CN185949; Name=CN185949; organism=Citrus sinensis; type=EST; length=539bp
CATTAAGGCTGAAGACGAGGAGCACAAGAAGAAGGTCGACGCCAAGAATG
CCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAG
ATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCAT
TGATCAGGCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATG
AATTTGAAGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATT
GCCAAGATGTATCAAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGA
TGATGCTCCTCCAGCTGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAG
TTGACTAAGCTTCCAGTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTT
TTGACGGTGGGAAAACTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGC
CTTAGGATGAATATTAATTTTTCCTTTTCTTTTTATTTTTCAAATTTTAC
TTTTAATTCGGACCAATTTATATAATGAATATTTTTCGG
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