CN185949 | Citrus Genome Database

Overview


Name	CN185949
Unique Name	CN185949
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	539

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2889	contig	Csv1_Contig2889:202..739.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 49/87 (56.32%), Postives = 68/87 (78.16%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  ADKKKI +  ++A+ WL++NQLAE DEF+ K +ELE +CNPII K+YQ
Sbjct:  528 KAEDEVQREKIAAKNALESYAFNMKSAVSDEGLKGKISDADKKKILNKCNEALSWLEANQLAEKDEFDHKRRELEQVCNPIITKLYQ 614

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612

[Close]

BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 2

Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K+EDE ++ +V AKNALE+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  529 KSEDEANRDRVAAKNALESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615

The following BLAST results are available for this feature:

BLAST of CN185949 vs. ExPASy Swiss-Prot

BLAST of CN185949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159


Match Name	E-value	Identity	Description
HS71L_PIG	8.640e-24	56.32	Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=...	[more]
HSP7C_SAGOE	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Saguinus oedi...	[more]
HSP7C_RAT	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Rattus norveg...	[more]
HSP7C_PONAB	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Pongo abelii ...	[more]
HSP7C_MOUSE	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Mus musculus ...	[more]
HSP7C_HUMAN	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Homo sapiens ...	[more]
HSP7C_HORSE	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Equus caballu...	[more]
HSP7C_CRIGR	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Cricetulus gr...	[more]
HSP7C_BOVIN	1.128e-23	56.32	Heat shock cognate 71 kDa protein OS=Bos taurus GN...	[more]
HSP72_HUMAN	1.128e-23	56.32	Heat shock-related 70 kDa protein 2 OS=Homo sapien...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0002B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185949 ID=CN185949; Name=CN185949; organism=Citrus sinensis; type=EST; length=539bp
CATTAAGGCTGAAGACGAGGAGCACAAGAAGAAGGTCGACGCCAAGAATG
CCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAG
ATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCAT
TGATCAGGCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATG
AATTTGAAGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATT
GCCAAGATGTATCAAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGA
TGATGCTCCTCCAGCTGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAG
TTGACTAAGCTTCCAGTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTT
TTGACGGTGGGAAAACTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGC
CTTAGGATGAATATTAATTTTTCCTTTTCTTTTTATTTTTCAAATTTTAC
TTTTAATTCGGACCAATTTATATAATGAATATTTTTCGG