CN185949

Overview
NameCN185949
Unique NameCN185949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:202..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 4.741e-22
Identity = 42/86 (48.84%), Postives = 71/86 (82.56%), Query Frame = 2
Query:   11 EDEEHKKKVDAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            ED++ K+++DA+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+ +A++WLD NQ AE +++E+K+KE+E++CNPI++ +YQ
Sbjct:  557 EDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQ 642          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.192e-22
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE ++ +V AKN+LE+Y YNM+ TV+DEK+  K+   DK+K+ D   + I  LD NQ+AE +E+E K KELE +CNPI+ K+YQ
Sbjct:  529 KAEDEANRDRVGAKNSLESYTYNMKQTVEDEKLKGKISDQDKQKVLDKCQEVISSLDRNQMAEKEEYEHKQKELEKLCNPIVTKLYQ 615          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.087e-22
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 262
            K EDE   K+V AKN LE+YAY++RNT+ D K+  KLD ADK+K++  ID+ + WLD NQ A  +E+E++ KELE+I NPI+ K Y
Sbjct:  525 KEEDEAEAKRVAAKNGLESYAYSLRNTLSDSKVDEKLDAADKEKLKSEIDKIVAWLDENQQATREEYEERQKELEAIANPIMMKFY 610          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_LEIDO (Heat shock 70 kDa protein OS=Leishmania donovani GN=HSP70 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.056e-21
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            +A+D   + +V+AKN LENYAY+M+NT+ D  +  KLD +DK  +   ID  ++WL SNQ A  +E+E K KELES+CNPI+ KMYQ
Sbjct:  528 EADDRAQRDRVEAKNGLENYAYSMKNTLGDSNVSGKLDDSDKATLNKEIDVTLEWLSSNQEATKEEYEHKQKELESVCNPIMTKMYQ 614          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 44/87 (50.57%), Postives = 69/87 (79.31%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K EDE+  KK++AKN+LENYAYN+RNTV+DEK+  K+   DKK IE+ + + ++++++N+  E +E+E+K KEL++  NPII+K+YQ
Sbjct:  532 KTEDEKLDKKLEAKNSLENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVKEVLEFIETNEDLEKEEYEEKEKELKNFANPIISKLYQ 618          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.802e-21
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + KV +KN+L++YA+NM+ TV+DEK+  K+   D + I D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  526 KAEDEKQRDKVSSKNSLDSYAFNMKATVEDEKLPGKILDEDHQNILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP74_TRYBB (Heat shock 70 kDa protein 4 OS=Trypanosoma brucei brucei PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.802e-21
Identity = 42/87 (48.28%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            +AED+ H   +DAKN LENYA++M+NT+ D  +  KLD ADK  +  A+++A++WL+ NQ A  +E+  + KELE +C PI++KMYQ
Sbjct:  529 EAEDKAHVXXIDAKNGLENYAFSMKNTINDPNVAGKLDDADKNAVTTAVEEALRWLNDNQEASLEEYNHRQKELEGVCAPILSKMYQ 615          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21
Identity = 41/87 (47.13%), Postives = 67/87 (77.01%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            KAEDE+ + K+ AKN+LE+ A+N++++ +D+ +  K+   D+K++ +  D+ I WL++NQLA+ DEF+ K KELE +CNPII+K+YQ
Sbjct:  528 KAEDEQQRDKIAAKNSLESLAFNLKSSAQDDSLKDKISQEDRKRVVEKCDETIAWLENNQLADKDEFQHKQKELEKVCNPIISKLYQ 614          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21
Identity = 41/87 (47.13%), Postives = 66/87 (75.86%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            +AED++  +++DAKN LENYA++M+N V D  +  K++ ADKK I  A+++A++WL++NQ A  +E+E + KELE++C PI+  MYQ
Sbjct:  529 EAEDKDQVRQIDAKNGLENYAFSMKNAVNDPNVAGKIEEADKKTITSAVEEALEWLNNNQEASKEEYEHRQKELENLCTPIMTNMYQ 615          
BLAST of CN185949 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    5 KAEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 265
            K ED+  + KV +KN+LE+YA+NM++TV+DEK+  K+   DK KI +  ++ I WLD NQ AE +E+E   KELE +CNPII K+YQ
Sbjct:  526 KCEDDVQRDKVSSKNSLESYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQ 612          
The following BLAST results are available for this feature:
BLAST of CN185949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
BIP2_MAIZE4.741e-2248.84Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP70_CHICK6.192e-2252.87Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HSP70_NEUCR8.087e-2253.49Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]
HSP70_LEIDO1.056e-2151.72Heat shock 70 kDa protein OS=Leishmania donovani G... [more]
HSP70_PYRSA1.379e-2150.57Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
HSP7C_CHICK1.802e-2152.87Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP74_TRYBB1.802e-2148.28Heat shock 70 kDa protein 4 OS=Trypanosoma brucei ... [more]
HSP71_ORYLA2.353e-2147.13Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP70_TRYCR2.353e-2147.13Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
HSP70_ONCMY2.353e-2151.72Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185949 ID=CN185949; Name=CN185949; organism=Citrus sinensis; type=EST; length=539bp
CATTAAGGCTGAAGACGAGGAGCACAAGAAGAAGGTCGACGCCAAGAATG
CCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAG
ATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCAT
TGATCAGGCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATG
AATTTGAAGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATT
GCCAAGATGTATCAAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGA
TGATGCTCCTCCAGCTGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAG
TTGACTAAGCTTCCAGTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTT
TTGACGGTGGGAAAACTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGC
CTTAGGATGAATATTAATTTTTCCTTTTCTTTTTATTTTTCAAATTTTAC
TTTTAATTCGGACCAATTTATATAATGAATATTTTTCGG
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