CN185944

Overview
NameCN185944
Unique NameCN185944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8906 contig Csv1_Contig8906:174..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:   56 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 310
            +EQ   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   Y IG++ P
Sbjct:    2 AEQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHP 86          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:   56 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 310
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F++DHPGG+EVL    G DAT +FED+GHS  ARE+   + IG++ P
Sbjct:    2 AEQSDKAVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGELHP 86          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   62 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 310
            Q   D K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    4 QSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 36/70 (51.43%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   95 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 304
            EEV  HN   D ++++  KVYD+S F+D HPGG+EVL+   G+DA+  FEDVGHS+ A+E+++K+YIG++
Sbjct:    9 EEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:   56 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 310
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    2 AEQSDKAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 2
Query:   56 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 310
            +E+ +   K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   + IG++ P
Sbjct:    2 AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 86          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   62 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 310
            Q   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  ARE+   Y IG++ P
Sbjct:    4 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHP 86          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   80 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 325
            + ++ EEV  HN ++  W+I+  ++YD++ F+D+HPGG+EVL    G DAT +FEDVGHS  AR + + + IG++ P   P+
Sbjct:   15 RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGELHPDDRPK 96          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 2
Query:   77 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQP 355
            P+ +  EEVA HN  + CW +  GKVYD + ++D+HPGG E ++   G DAT++F  + HS  A+ M+ +YYIGD+  S      A +P  QP
Sbjct:  497 PRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVASKPAAAGATVPEPQP 588          
BLAST of CN185944 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   92 FEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDID-PSTVPRKRAYIP 343
            +++VA HN  KD +++I  KVYD++ F+D+HPGG+EVL+   G+D+T  FEDVGHSD ARE ++   +G +   +  P+ +A +P
Sbjct:    7 YQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTLKRQAGDPKPKAPLP 91          
The following BLAST results are available for this feature:
BLAST of CN185944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CYB5_RAT4.512e-1847.06Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_HORSE4.512e-1847.06Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT5.893e-1848.19Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB52_SCHPO5.893e-1851.43Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_PIG7.696e-1847.06Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_BOVIN1.005e-1745.88Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_MOUSE2.239e-1746.99Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_CHICK2.924e-1742.68Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
NIA_VOLCA3.819e-1741.94Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_NEUCR4.988e-1744.71Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185944 ID=CN185944; Name=CN185944; organism=Citrus sinensis; type=EST; length=734bp
CGTGTGAGAGAGCCCAAATTCTTTTGCTCTCCTCTCTGTCTCTCTCGTCT
GCAGTAGCGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCGAAGAG
GTCGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGCAA
GGTGTATGATGTGTCCTCGTTCATGGATGATCACCCTGGAGGAGATGAGG
TTTTGATTTCTGCAACTGGGAAAGATGCAACAAATGACTTTGAAGATGTG
GGTCACAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGTGA
CATTGATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACCGCAGC
AACCTGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTCTA
CAGATTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGCGGTCAGACA
CTATACCAAGAAAGAGTAGGTCACAATATCAATAAAATGAGTCATCTCCG
GAATGGGAAGCTGGTGATTTGCATGAGCTTAGTTCTAGGACATTTATCTT
TTATTTACTTTCCTATGGTGTTTGGTTTTGCTGAAATTGAATAGTGGTTC
GTAGTCCACCAGAGACCATATTGTCTGTCTTCTCTTGAGTGTCTTGTTTC
TAATGTTTTTCATTGATGGTCATGGGATAATGTTTACTTTTATTGGATCC
TTGGATGGAAAGCAAGGGCAAGTTATTCCTTCTA
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