CN185943

Overview
NameCN185943
Unique NameCN185943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = -3
Query:  437 EQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 691
            +++ +    ++ EEVA  N  K+ WL+I G+VYDV+ F+++HPGG+EVL+   G DA+  FEDVGHS  AREM+ +YYIGDI PS
Sbjct:   14 QEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = -3
Query:  422 SDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRK 679
            SDP +  ++ EEVA  N  ++ W++I G+VYD++ F+ +HPGG+EVL+   G DAT  FEDVGHS  AREM+ +YYIGD+ P+ +  K
Sbjct:   16 SDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPK 103          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -3
Query:  377 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDK 673
            PK++ ++EVA HN  ++ W+II  KVYDVS F D+HPGGDE+++   G+DAT  F D+GHSD A  ++   YIGD+D ++   +R  +     + NQ K
Sbjct:    2 PKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS---ERVSVEKVSTSENQSK 97          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = -3
Query:  368 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPE 652
            EVA HN  KD WL+I   +YDV++F+++HPGG+EVLI   GKDAT +FEDVGHS+ AR+MM KY IG++  S    + +     +P ++ ++  E
Sbjct:   13 EVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVES---ERTSVAQKSEPTWSTEQQTE 104          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = -3
Query:  371 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTP 670
            K  + EE+  HN +KD +++I+GKVYDVS+F DDHPGG ++++   G+DAT  ++D+GHS +A E++++ YIGD+ P T  R +    P+  +++ D  P
Sbjct:    4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGTEERLKELKKPR--SFDNDTPP 101          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = -3
Query:  434 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPST 670
            KI   +EV+ H    D W++I  KVYD++ F+ +HPGG+EVL+   GKDAT  FED+GHSD AREM+++Y IG +D ++
Sbjct:    4 KIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS 82          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.175e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = -3
Query:  425 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 670
            K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT DFEDVGHS  ARE+   Y IG++ P   P+
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGELHPDDRPK 87          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = -3
Query:  368 ASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQ-QPAYNQDKTPE 682
            + D K     EVA +N     W II   VYDV++F+++HPGG+EVLI   GKDAT  FEDVGHS  AREMM +Y +G++    V  +R+ +P + +P +N ++  E
Sbjct:    3 SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGEL----VAEERSNVPEKSEPTWNTEQKTE 104          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  425 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 694
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  AREM   + IG++ P   P+
Sbjct:    2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPK 91          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 37/74 (50.00%), Postives = 57/74 (77.03%), Query Frame = -3
Query:  446 IHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 667
            I+  EEVA H    D W+I++GKVY++S+++D+HPGG+EV++   G DAT  F+D+GHSD A E+++K YIG++
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNL 83          
The following BLAST results are available for this feature:
BLAST of CN185943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CYB5B_HUMAN2.017e-2151.76Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5B_RAT2.635e-2150.00Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_YEAST2.230e-2044.44Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5_DROME2.913e-2047.37Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB51_SCHPO1.107e-1942.00Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
CYB5_RHIST1.888e-1950.63Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_ALOSE7.175e-1950.00Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB5_MUSDO1.224e-1844.34Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_HUMAN1.224e-1846.67Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_CANTR1.224e-1850.00Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185943 ID=CN185943; Name=CN185943; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTTTTGAAGGAATAACTTGCCCTTGCTTTCCATCCCAT
TATGCAATAAAAGTAAACATTATCCCATGACCATCAATCCAAAACATTAG
AAACAAGACACTCAAGAGAAGACAGACAATATGGTCTCTGGTGGACTACG
AACCACTATTCAATTTCAGCAAAACCAAACACCATAGGAAAGTAAATAAA
AGATAAATGTCCTAGAACTAAGCTCATGCAAATCACCAGCTTCCCATTCC
GGAGATGACTCATTTTATTGATATTGTGACCTACTCTTTCTTGGTATAGT
GTCTGACCGCAAAGGCTAAACCCAATATCAAGAGCGGCACAAGAATCTGT
AGAATCTTAATAATGAACTCAGGGGTCTTGTCTTGATTGTAAGCAGGTTG
CTGCGGTGGAATATATGCACGTTTCCGAGGAACAGTTGAGGGATCAATGT
CACCAATATAGTACTTGTCCATCATCTCCCTAGCGGAGTCACTGTGACCC
ACATCTTCAAAGTCATTTGTTGCATCTTTCCCAGTTGCAGAAATCAAAAC
CTCATCTCCTCCAGGGTGATCATCCATGAACGAGGACACATCATACACCT
TGCCAGAAATAATAAGCCAGCAATCCTTAGTTTTGTTGTGCGTGGCGACC
TCTTCGAACTGGTGAATCTTTGGATCTGAGGCCATTTGTTCGCTACTGCA
GACGAGAGAGACAGAGAGGAGAGCAAAAGAATTTGGGCTCTCTCCCT
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