CN185943

Overview
NameCN185943
Unique NameCN185943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = -3
Query:  407 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIP 652
            +++ H      +L I GKVYD + F+D+HPGG+EVLI   G+DAT  FEDVGHSD AR++M K  +G+    +  + +A  P
Sbjct:   11 DLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSSEKPKAKSP 92          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.548e-13
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            S+  M +  K++   EV  HN    CW+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  534 STPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 616          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            SS  M +  K++   EV  HN  +  W+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A+++++ Y IG++
Sbjct:  531 SSPFMNTSAKMYSMSEVRKHNSVESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.504e-13
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            SS  M +  K +   EV  HN     W+I++G VYD + F+ DHPGG++ ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  507 SSPFMNTATKSYSLSEVRRHNNRDSAWIIVNGHVYDCTRFLKDHPGGEDSILLNAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 589          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.683e-13
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            SS  M +  K +   EV  HN     W+I+ G VYD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  509 SSPFMNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGEL 591          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  446 NSFALLSVSLVCSSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 733
            +S A  S+    SS  M +  K+    EV  HN  +  W+I+ G +YD + F+ DHPGG + ++   G D T +F+ + HSD A++M++ Y IG++
Sbjct:  508 SSDANQSLKKSVSSPFMNTSSKMFSMSEVKKHNSAESAWIIVHGHIYDCTHFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 602          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            SS  M +  K++   EV  HN     W+I+ G VYD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y +G++
Sbjct:  513 SSPFMNTFTKMYSLSEVKKHNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAI-HSDKAKKMLEDYRVGEL 595          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            SS  M +  K +   EV  HN     W+I+ G VYD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  505 SSPFMNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGEL 587          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            S+  M +  K++   EV  HN  +  W+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A+++++ Y IG++
Sbjct:  531 STPFMNTASKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of CN185943 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  446 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 697
            SS  M +  K++   EV  HN     W+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A+++++ Y IG++
Sbjct:  537 SSPFMNTASKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 619          
The following BLAST results are available for this feature:
BLAST of CN185943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CYB5_MORAP5.685e-1645.12Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
NIA2_ARATH1.548e-1338.10Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA2_BRANA4.504e-1336.90Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA1_PHAVU4.504e-1339.29Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA2_SOYBN7.683e-1339.29Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA_BETVE1.311e-1235.42Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA_LOTJA1.712e-1238.10Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA1_SOYBN1.712e-1239.29Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA1_BRANA1.712e-1235.71Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA1_ARATH2.236e-1236.90Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185943 ID=CN185943; Name=CN185943; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTTTTGAAGGAATAACTTGCCCTTGCTTTCCATCCCAT
TATGCAATAAAAGTAAACATTATCCCATGACCATCAATCCAAAACATTAG
AAACAAGACACTCAAGAGAAGACAGACAATATGGTCTCTGGTGGACTACG
AACCACTATTCAATTTCAGCAAAACCAAACACCATAGGAAAGTAAATAAA
AGATAAATGTCCTAGAACTAAGCTCATGCAAATCACCAGCTTCCCATTCC
GGAGATGACTCATTTTATTGATATTGTGACCTACTCTTTCTTGGTATAGT
GTCTGACCGCAAAGGCTAAACCCAATATCAAGAGCGGCACAAGAATCTGT
AGAATCTTAATAATGAACTCAGGGGTCTTGTCTTGATTGTAAGCAGGTTG
CTGCGGTGGAATATATGCACGTTTCCGAGGAACAGTTGAGGGATCAATGT
CACCAATATAGTACTTGTCCATCATCTCCCTAGCGGAGTCACTGTGACCC
ACATCTTCAAAGTCATTTGTTGCATCTTTCCCAGTTGCAGAAATCAAAAC
CTCATCTCCTCCAGGGTGATCATCCATGAACGAGGACACATCATACACCT
TGCCAGAAATAATAAGCCAGCAATCCTTAGTTTTGTTGTGCGTGGCGACC
TCTTCGAACTGGTGAATCTTTGGATCTGAGGCCATTTGTTCGCTACTGCA
GACGAGAGAGACAGAGAGGAGAGCAAAAGAATTTGGGCTCTCTCCCT
back to top