CN185938

Overview
NameCN185938
Unique NameCN185938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 63/207 (30.43%), Postives = 96/207 (46.38%), Query Frame = 3
Query:   99 ETEALKAFKNGITSDPLGALADWNATNQIHHC--NWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIP 713
            +T AL    + + S   G L+ W A+     C  NW GITC  S + V  IKL    L G +   L  L+++   D+S N+  G +P QL     L  L L  N  +GS    I  +  L+ ++L  N LK  +       TSL  L L  N   G++P    +L S +     +N+  G+I + +  L  L+ L+++ N  +G IP
Sbjct:   31 DTSALNIMFSSMNSP--GQLSQWTASGG-DPCGQNWKGITC--SGSRVTQIKLPSLGLSGSLGFMLDKLTSVTEFDMSNNNLGGDLPYQLP--PNLERLNLANNQFTGSAQYSISMMAPLKYLNLAHNQLK-QLAIDFTKLTSLSILDLSSNAFIGSLPNTCSSLTSAKSIYLQNNQFSGTIDI-LATL-PLENLNIANNRFTGWIP 227          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 54/177 (30.51%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  192 CNWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEI-GSLQNLQAMDLGKN-FLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIG--NLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTI 710
            C W+ I C   +  V  I++    LQG +SP L NLS L+ L+L  N+ SG +P+  G  S   ++ +  N+   SIP ++   L +LQ++++  N F    IPES+ N ++L        N++G++P  +G      L +     N L G +P+S+   + +Q+L ++   L+G I
Sbjct:   53 CKWTHIVCT-GTKRVTRIQIGHSGLQGTLSPDLRNLSELERLELQWNNISGPVPSLSGLAS--LQVLMLSNNNFDSIPSDVFQGLTSLQSVEIDNNPFKSWEIPESLRNASALQNFSANSANVSGSLPGFLGPDEFPGLSILHLAFNNLEGELPMSLAGSQ-VQSLWLNGQKLTGDI 225          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: LRRC1_HUMAN (Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  288 LGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIPLEIG 725
            L  L  L+ LDL  N    ++P  +G    L +L L  N LS  +P EIG+L+NL  +D+ +N L+  +PE I   TSL  L +I  NL  TIP  IG L  L +     NRL   +P ++G  E+L  L +++N L  T+P  IG
Sbjct:  170 LTQLRRLEELDLGNNEIY-NLPESIGALLHLKDLWLDGNQLS-ELPQEIGNLKNLLCLDVSENRLE-RLPEEISGLTSLTDL-VISQNLLETIPDGIGKLKKLSILKVDQNRLT-QLPEAVGECESLTELVLTENQLL-TLPKSIG 309          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: LRC28_XENTR (Leucine-rich repeat-containing protein 28 OS=Xenopus tropicalis GN=lrrc28 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 54/142 (38.03%), Postives = 74/142 (52.11%), Query Frame = 3
Query:  288 LGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIP 713
            +G+L  LQ LDLS N+     P  +G+   L  L L  N L   +PPEIG L+ LQ +DL  N L  S+PE +  C SL  L  +  NL  +IP+ +  L SL       NRL  S+P+ +GR   LQ + V  N+    +P
Sbjct:   84 IGSLVKLQSLDLSNNALEILCP-DIGRLKSLRHLRLTNNRLK-FLPPEIGKLKELQTLDLSTNHLV-SLPEKLYQCQSLQYL-TVDRNLLCSIPRQLCQLASLNELSMAGNRL-ASLPLDLGRSRELQYVYVDNNVQLKGLP 220          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 62/211 (29.38%), Postives = 99/211 (46.92%), Query Frame = 3
Query:   84 SLEEVETEALKAFKNGITSDPLGALADWNATNQIHHCNWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIPL 716
            SL   +  AL +FK+  T+D    L  ++ T +  +C W G+ C  +   ++ + L    L+G  S                        A L +  QL  L+L  NSL G IP ++  L NL+++ L +N   G+ P SI +   L+ L +  NN +G+IP +I  L  L       NR  G++P S+ +   L + +VS N L+G IP+
Sbjct:   29 SLLPSDAVALLSFKS--TADLDNKLL-YSLTERYDYCQWRGVKC--AQGRIVRLVLSGVGLRGYFSS-----------------------ATLSRLDQLRVLSLENNSLFGPIP-DLSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGTLP-SLNQ-SFLTSFNVSGNNLTGVIPV 208          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: LRRA_DICDI (Leucine-rich repeat protein lrrA OS=Dictyostelium discoideum GN=lrrA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  273 QISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLT-GTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIPLEIG 725
            Q  P L NL  L++L +  N     +P  LG  S+L EL +  N     IP +I +L NLQ +DL  N ++  +P  + N  +L  L L  N LT   IP +IG L++L+  +  +N L+ ++P  +  ++AL+  + S N L   IP EIG
Sbjct:  237 QYVPQLSNLRQLKILSIR-NLQITHLPLGLGLLSELIELDIRDNPQLKEIPYDIATLINLQKLDLFGNNMR-IVPREVGNLINLQTLDLRQNKLTIDNIPSEIGKLVNLKKLLLSNNLLI-ALPPEIASMKALKEFEASNNQLQ-AIPTEIG 384          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: LRCH4_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Homo sapiens GN=LRCH4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 48/141 (34.04%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  276 ISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNML 698
            ++P LGNL+AL  L+LS N  S  +P  +  C     + +  N+  G++PP+IG+L +L+ +D+  N L+ S+P  +C  +SL  L +  N L+ T+P+++G+L  +++  + +   V  IPVS  RL  LQ + +  N L
Sbjct:  106 LNPALGNLTALTYLNLSRNQLS-LLPPYI--CQLPLRVLIVSNNKLGALPPDIGTLGSLRQLDVSSNELQ-SLPSELCGLSSLRDLNVRRNQLS-TLPEELGDLPLVRLDFSCNR--VSRIPVSFCRLRHLQVILLDSNPL 239          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: PIDD_HUMAN (Leucine-rich repeat and death domain-containing protein OS=Homo sapiens GN=LRDD PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  297 LSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIP 713
            +  L  L LS N  S  +P  LG    L  LT+ +N L  ++PP +G+L  LQ +DL +N L  ++P  I    SLL L L  N L  ++P  +  L SL++ V  H+ L+ S+P  + RL  L  LD+  N L    P
Sbjct:  147 MRGLGALLLSHNCLS-ELPEALGALPALTFLTVTHNRLQ-TLPPALGALSTLQRLDLSQNLL-DTLPPEIGGLGSLLELNLASNRLQ-SLPASLAGLRSLRLLV-LHSNLLASVPADLARLPLLTRLDLRDNQLRDLPP 280          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 48/135 (35.56%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  198 WSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQM 602
            W+ I C+   N V ++ L    L+  ISP  G+L  L+ LDL   S +G+I   +G    L +L L +N L  S   E+  L NL+ +DL  N L+GS+PE++     L  L L  NNL G +P+ + N+  L++
Sbjct:  376 WNHIECE--GNRVTSLFLSKINLRS-ISPTFGDLLDLKTLDLHNTSLTGAIQ-NVGSLKDLQKLNLSFNQLE-SFGSELEDLVNLEVLDLQNNSLQGSVPETLGKLKKLRLLNLENNNLVGPLPQSL-NITGLEV 504          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: CYAA_NEUCR (Adenylate cyclase OS=Neurospora crassa GN=cr-1 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  300 SALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLS 701
            S L  LD+S N       ++L + + L +L L  N L  S+PP +G+ ++L+ +++  NFL    P  IC   +++ L L FN++   +P ++  L +L+ FV  +NRL G I  S+  L +L+ LD+  N +S
Sbjct:  939 SKLTYLDVSNNRLQDLDHSELSKLTGLLKLNLANNCLR-SLPPTLGAYKSLRTLNISSNFLD-VFPSFICELETIVDLDLSFNSINN-LPDNLMKLRNLEKFVITNNRLSGPISESVRDLVSLRELDIRYNQIS 1069          
The following BLAST results are available for this feature:
BLAST of CN185938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
SRF7_ARATH9.511e-1330.43Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
TMK1_ARATH3.614e-1230.51Probable receptor protein kinase TMK1 OS=Arabidops... [more]
LRRC1_HUMAN4.720e-1238.36Leucine-rich repeat-containing protein 1 OS=Homo s... [more]
LRC28_XENTR6.165e-1238.03Leucine-rich repeat-containing protein 28 OS=Xenop... [more]
Y5720_ARATH8.051e-1229.38Probable inactive receptor kinase At5g67200 OS=Ara... [more]
LRRA_DICDI8.051e-1234.87Leucine-rich repeat protein lrrA OS=Dictyostelium ... [more]
LRCH4_HUMAN1.052e-1134.04Leucine-rich repeat and calponin homology domain-c... [more]
PIDD_HUMAN3.059e-1135.97Leucine-rich repeat and death domain-containing pr... [more]
Y5487_ARATH3.996e-1135.56Probable LRR receptor-like serine/threonine-protei... [more]
CYAA_NEUCR8.902e-1132.84Adenylate cyclase OS=Neurospora crassa GN=cr-1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185938 ID=CN185938; Name=CN185938; organism=Citrus sinensis; type=EST; length=725bp
CGGTTCAGACAGTCAGCTTAAGCTTAATCGTAGTCATATCCTTTTCTCTC
TTTTCCACTGTTGCATTATCACCTGCAGAACGAAGCTTAGAAGAAGTAGA
AACTGAAGCCTTGAAGGCCTTTAAGAATGGCATCACCAGCGACCCTTTAG
GAGCACTTGCTGATTGGAATGCCACAAATCAAATTCATCACTGCAACTGG
TCTGGAATCACCTGTGACCATTCGTCAAACCATGTCATTGCCATTAAACT
CGTCGACAAGCAGCTCCAAGGCCAGATATCTCCATTCCTTGGCAACCTTT
CAGCCCTCCAGGTTCTCGATTTATCTTTGAATTCATTCTCTGGGAGTATT
CCGGCTCAGCTGGGGCAATGCTCCCAGCTTGCTGAACTAACTCTATACTA
TAATTCTCTTTCGGGTTCCATTCCACCAGAAATAGGATCCCTTCAGAATC
TGCAAGCAATGGACTTAGGAAAGAACTTCTTGAAGGGAAGCATACCCGAA
AGCATTTGCAACTGTACTTCCTTGTTAGCGCTTGGTCTCATTTTCAACAA
TCTTACTGGTACAATCCCAAAAGACATCGGAAATTTGATAAGCCTTCAAA
TGTTTGTAGCATACCACAACAGGCTTGTAGGTTCAATTCCAGTTTCCATG
GGTAGATTAGAAGCCTTGCAAGCTTTAGATGTGAGTCAGAACATGTTGTC
GGGAACAATACCTCTAGAAATAGGA
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